| MirGeneDB ID | Cin-Mir-4093 |
|---|
| Family name |
MIR-4093 (all species) |
|---|
| Seed |
UGCAACA |
|---|
| Species |
Sea Squirt (Ciona intestinalis) |
|---|
| MiRBase ID |
cin-mir-4093
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
C. intestinalis
|
|---|
| Node of Origin (family) |
C. intestinalis
|
|---|
Genome context
(ci3) |
1: 3128495-3128562 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UAUAUACCGGUACACGCUGGGUGUCAGCAUCUCCGCAGCUUUUGCUGCAUUAGUUGCCCAUAAAGGGCGGAUACGUGAUGCAACAAAACUGCGGUUAUGUUGGACUACAGGUAUUCAACGAAAUUCCG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UAUAUACCGGUACACGCUG---| G CU C C GUUGCCCAUAA
GGU UCAGCAU CCGCAG UUUUG UGCAUUA \
UCA GGUUGUA GGCGUC AAAAC ACGUAGU A
GCCUUAAAGCAACUUAUGGACA^ - UU - A GCAUAGGCGGG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Ga |
La |
La |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Cin-Mir-4093_5p* |
| mirBase accession | MIMAT0016672 |
|---|
| Sequence |
0- CUCCGCAGCUUUUGCUGCAUUA -22
Get sequence
|
|---|
| Mature sequence |
Cin-Mir-4093_3p |
| mirBase accession | MIMAT0016673 |
|---|
| Sequence |
47- AUGCAACAAAACUGCGGUUAU -68
Get sequence
|
|---|
