MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4076

Family name MIR-4076 (all species)
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4076
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 1: 3976074-3976131 [+] UCSC Ensembl
Seed AACGAGU
Precursor
(pre-Mir +30nt flank)		 
CAAGAAAUAUAAACUCCGCCAAAAAAUCUUCAACGAGUCCCUGAAAAAUCCCGACAUACAAAUUCGGGUGUUUCAGGGAAUCGUUACAGAAAUGGCGAGAACUUUCAUCUGCAAGGAC
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Structure
        10             20        30        40        50         
CAAGAAAUAUAAACUCC-----|   AAAAA   UC     G         AAU    ACAUA 
                      GCCA     UCU  AACGA UCCCUGAAA   CCCG     \
                      CGGU     AGA  UUGCU AGGGACUUU   GGGC     C
CAGGAACGUCUACUUUCAAGAG^   AA---   CA     A         GU-    UUAAA 
      110       100           90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
C- C- C- C- C- C- C- C- C- C- Ga La La
Mature sequence

Cin-Mir-4076_5p
mirBase accessionMIMAT0016640
Sequence 
0- CAACGAGUCCCUGAAAAAUCCCG -23
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Star sequence

Cin-Mir-4076_3p*
mirBase accessionMIMAT0016641
Sequence 
36- GGUGUUUCAGGGAAUCGUUACA -58
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