MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4053

Family name MIR-4053 (all species)
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4053
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 HT000098.1: 146779-146840 [+] UCSC Ensembl
Seed AGUACGU
Precursor
(pre-Mir +30nt flank)		 
ACUUUUCCGCGCUGCAGUCUUUCGUUUACUCGCCGGGGUAUGACGUCGUACUGUGACGUAGGUUGCGCAGUAGUACGUCGUUCUCCGGACGGUAUUAGGAAGAACUAUCAUCAAGGACCCCC
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Structure
        10          20        30         40        50        60
ACUUUUCCGCGCUGCAG--|     GUU   U  -      U       CG    GUGACGU 
                   UCUUUC   UAC CG CCGGGG AUGACGU  UACU       A
                   AGAAGG   AUG GC GGCCUC UGCUGCA  AUGA       G
CCCCCAGGAACUACUAUCA^     AUU   -  A      U       UG    CGCGUUG 
120       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
C- C- C- C- C- C- C- C- C- C- Ga La La
Star sequence

Cin-Mir-4053_5p*
mirBase accessionMIMAT0016595
Sequence 
0- CGCCGGGGUAUGACGUCGUACU -22
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Mature sequence

Cin-Mir-4053_3p
mirBase accessionMIMAT0016596
Sequence 
40- UAGUACGUCGUUCUCCGGACGG -62
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