MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4045

Family name MIR-4045 (all species)
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4045
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 HT000105.1: 43955-44009 [+] UCSC Ensembl
Seed CACAAUG
Precursor
(pre-Mir +30nt flank)		 
CAAGUUAUGAGCCUACUUCGGUUCAGUUUGCCACAAUGAAAGUAGAUGUCCGUUGGCCAUAAACGGGAUCACUAUCAUUGUGAAAAACUGCAGCGAACCAACAACGAUUAACUCC
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Structure
        10        20          30        40        50        
CAAGUUAUGAGCCUACUUCG-   -|     GC        A   A   G      GGC 
                     GUU CAGUUU  CACAAUGA AGU GAU UCCGUU   \
                     CGA GUCAAA  GUGUUACU UCA CUA GGGCAA   C
CCUCAAUUAGCAACAACCAAG   C^     AA        A   -   -      AUA 
   110       100        90        80         70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
C- C- C- C- C- C- C- C- C- C- Ga La La
Mature sequence

Cin-Mir-4045_5p
mirBase accessionMIMAT0016579
Sequence 
0- CCACAAUGAAAGUAGAUGUCCGUU -24
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Star sequence

Cin-Mir-4045_3p*
mirBase accessionMIMAT0016580
Sequence 
33- CGGGAUCACUAUCAUUGUGAAA -55
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