| MirGeneDB ID | Cin-Mir-4044 |
|---|
| Family name |
MIR-4044 (all species) |
|---|
| Species |
Sea Squirt (Ciona intestinalis) |
|---|
| MiRBase ID |
cin-mir-4044
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
C. intestinalis
|
|---|
| Node of Origin (family) |
C. intestinalis
|
|---|
Genome context
(ci3) |
HT000127.1: 131957-132015 [-]
UCSC
Ensembl
|
|---|
| Seed |
GAAAUAG |
|---|
Precursor
(pre-Mir +30nt flank) |
GGAUGCUGUUUUCAAAUGCGGUUGUAGCUGAGUUGGUAGACUGAUUUCAGUUCCCUUUUCUUUCGACUGAAAUAGGUCUGCUAACUAAUGUUACAAUCAGCAUUAUCUGCGGGAAUCAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGAUGCUGUUUUCAAAU- - UG-| G UCCCUU
GC GGUUGUAGC AGUUGGUAGACU AUUUCAGU U
CG CUAACAUUG UCAAUCGUCUGG UAAAGUCA U
UACUAAGGGCGUCUAUUA A UAA^ A GCUUUC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
| C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
Ga |
La |
La |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Cin-Mir-4044_5p* |
| mirBase accession | MIMAT0016577 |
|---|
| Sequence |
0- AGUUGGUAGACUGAUUUCAGU -21
Get sequence
|
|---|
| Mature sequence |
Cin-Mir-4044_3p |
| mirBase accession | MIMAT0016578 |
|---|
| Sequence |
37- UGAAAUAGGUCUGCUAACUAAU -59
Get sequence
|
|---|
