| MirGeneDB ID | Cin-Mir-4036 |
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| Family name |
MIR-4036 (all species) |
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| Species |
Sea Squirt (Ciona intestinalis) |
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| MiRBase ID |
cin-mir-4036
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. intestinalis
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| Node of Origin (family) |
C. intestinalis
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Genome context
(ci3) |
HT000034.1: 635404-635456 [+]
UCSC
Ensembl
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| Seed |
GUGCAAA |
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Precursor
(pre-Mir +30nt flank) |
AUCACGAAUCAUAUGAUCGUGAGGGCGGUGUGUGCAAAGCCCAAUCAUGUCUAUGCCAGUUAGACGGGUUGGUUUUGCAUGUGCUGACUUCACAGAAAUCUUCAAGCUUAUUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AUCACGAAUCAUAUGAUC--| G UG C A UGC
GUGAGG CGG UGUGCAAAGCC AAUC UGUCUA \
CACUUC GUC GUACGUUUUGG UUGG GCAGAU C
UUUAUUCGAACUUCUAAAGA^ A GU - - UGA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
Ga |
La |
La |
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| Mature sequence |
Cin-Mir-4036_5p |
| mirBase accession | MIMAT0016561 |
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| Sequence |
0- UGUGCAAAGCCCAAUCAUGUCUA -23
Get sequence
|
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| Star sequence |
Cin-Mir-4036_3p* |
| mirBase accession | MIMAT0016562 |
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| Sequence |
32- GACGGGUUGGUUUUGCAUGUG -53
Get sequence
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