| MirGeneDB ID | Cin-Mir-4029 |
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| Family name |
MIR-4029 (all species) |
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| Species |
Sea Squirt (Ciona intestinalis) |
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| MiRBase ID |
cin-mir-4029
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. intestinalis
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| Node of Origin (family) |
C. intestinalis
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Genome context
(ci3) |
14: 3195082-3195137 [-]
UCSC
Ensembl
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| Seed |
AAGUGCA |
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Precursor
(pre-Mir +30nt flank) |
UAAACAUCUUUGUUUCAAACUGCAGUGGGUAAAGUGCAACUGUGUAAACCUGAUUAUACUGCAGGUUUACAUUGCAUGCACUUAUCCUAAUGCUAGUUACAAUCAUCUGAAGUUUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UAAACAUCUUUGUUUCA- - G UA ACU-| GAUUA
AACU GCA UGGG AAGUGCA GUGUAAACCU \
UUGA CGU AUCC UUCACGU UACAUUUGGA U
UUUUGAAGUCUACUAACA U A UA ACGU^ CGUCA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
Ga |
La |
La |
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| Mature sequence |
Cin-Mir-4029_5p |
| mirBase accession | MIMAT0016547 |
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| Sequence |
0- AAAGUGCAACUGUGUAAACCU -21
Get sequence
|
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| Star sequence |
Cin-Mir-4029_3p* |
| mirBase accession | MIMAT0016548 |
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| Sequence |
34- GUUUACAUUGCAUGCACUUAUC -56
Get sequence
|
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