MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4011-P1

Family name MIR-4011 (all species)
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4011a
Paralogues Cin-Mir-4011-P2 
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 HT000276.1: 10121-10182 [-] UCSC Ensembl
Seed ACAGUGG
Precursor
(pre-Mir +30nt flank)		 
AGCUUAGCGCUGAAUAGGCAGCUUAUUCUUCACAGUGGAGGUAAAGAUUGUGGUGAAUUUAAUGAACACGAUUUUUGCUUUCCACUGCACAAGAACAUGUAUGCAAAGUUCAACUCAGUGCU
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Structure
        10         20         30          40        50         
AGCUUAGCGCUGAAUAG-   -  UUA     CA-      -|             GUGAAU 
                  GCA GC   UUCUU   CAGUGG AGGUAAAGAUUGUG      U
                  CGU UG   AAGAA   GUCACC UUCGUUUUUAGCAC      U
UCGUGACUCAACUUGAAA   A  UAC     CAC      U^             AAGUAA 
120       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
- +
C- C- C- C- C- C- C- C- C- C- Ga La La
Mature sequence

Cin-Mir-4011-P1_5p
mirBase accessionMIMAT0016508
Sequence 
0- CACAGUGGAGGUAAAGAUUGUG -22
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Star sequence

Cin-Mir-4011-P1_3p*
mirBase accessionMIMAT0016509
Sequence 
38- CGAUUUUUGCUUUCCACUGCACAA -62
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