MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-340

Family name MIR-340 (all species)
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-340
Paralogues
Orthologues Bta-Mir-340  Cja-Mir-340  Cpo-Mir-340  Dno-Mir-340  Eca-Mir-340  Ete-Mir-340  Hsa-Mir-340  Laf-Mir-340  Mml-Mir-340  Mmr-Mir-340  Mmu-Mir-340  Ocu-Mir-340  Pab-Mir-340  Rno-Mir-340-P1  Rno-Mir-340-P2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)		 chr11: 1704597-1704661 [+] UCSC Ensembl
Seed UAUAAAG
Precursor
(pre-Mir +30nt flank)		 
GGUUUCUAAAACUCUUUGUACCUGAUGCGAUUAUAAAGCAAUGAGACUGAUUGUCAUGUGUCGGUUGUGGGAUCCGUCUCAGUUACUUUAUAGCCGUGCCUGGUACCUAACACCGCACACCACUG
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Structure
        10          20        30        40         50        60 
GGUUUCUAAAACUCUUU--     UGA    AU       CAA-|     U    GUCAUGUG 
                   GUACC   UGCG  UAUAAAG    UGAGAC GAUU        U
                   CAUGG   GUGC  AUAUUUC    ACUCUG CUAG        C
GUCACCACACGCCACAAUC     UCC    CG       AUUG^     C    GGUGUUGG 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-340_5p
mirBase accessionMIMAT0009892
Sequence 
0- UUAUAAAGCAAUGAGACUGAUU -22
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Proposed targets TargetScanVert: cfa-miR-340
miRDB: MIMAT0009892
Star sequence

Cfa-Mir-340_3p*
mirBase accessionNone
Sequence 
42- UCCGUCUCAGUUACUUUAUAGCC -65
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