| MirGeneDB ID | Cbr-Novel-5 |
|---|
| Family name |
CBR-NOVEL-5 (all species) |
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| Species |
Roundworm (Caenorhabditis briggsae) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. briggsae
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| Node of Origin (family) |
C. briggsae
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Genome context
(CB4) |
IV: 11828226-11828286 [-]
Ensembl
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| Seed |
UUGGACU |
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Precursor
(pre-Mir +30nt flank) |
AGAAUUUUGUUCUAGGGGCGUCUUCACAAGUUUGGACUGAGCUCUCCAAAACAUUUUUGGAUUGAAUAGUAUUGGAGAUUCGUUCCAAACUUGUGUUGUCUUUUUUAACGCCUAUACUUUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AGAAUUUUGUUCUAGGGGCGUCUU--| C C A AUUUUUG
CACAAGUUUGGA UGAG UCUCCAA AC G
GUGUUCAAACCU GCUU AGAGGUU UG A
GUUUCAUAUCCGCAAUUUUUUCUGUU^ U - A AUAAGUU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Ea |
Ma |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Yo |
Yo |
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| Mature sequence |
Cbr-Novel-5_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UUUGGACUGAGCUCUCCAAAACAU -24
Get sequence
|
|---|
| Star sequence |
Cbr-Novel-5_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- UAUUGGAGAUUCGUUCCAAACU -61
Get sequence
|
|---|
