| MirGeneDB ID | Cbr-Novel-4 |
|---|
| Family name |
CBR-NOVEL-4 (all species) |
|---|
| Species |
Roundworm (Caenorhabditis briggsae) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. briggsae
|
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| Node of Origin (family) |
C. briggsae
|
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Genome context
(CB4) |
III: 1713454-1713514 [-]
Ensembl
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| Seed |
GAUACGU |
|---|
Precursor
(pre-Mir +30nt flank) |
GAGGUGAGCAUAUAUUGUCCCAACUGCACUAGAAAUGCGUCAAGACGCUCAGACGUACUUUCAAAGAACUGAUACGUUGGCGCAUUUCUGGUGCCUUGGCGCAUUUGCCGUAAUUGGACGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GAGGUGAGCAUAUAUUGUC---| CU AG C- ACGUACU
CCAA GCACUAGAAAUGCGUCA ACG UCAG U
GGUU CGUGGUCUUUACGCGGU UGC AGUC U
CGCAGGUUAAUGCCGUUUACGC^ C- -- AU AAGAAAC
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| Ea |
Ma |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Yo |
Yo |
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| Star sequence |
Cbr-Novel-4_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGAAAUGCGUCAAGACGCUCAGA -23
Get sequence
|
|---|
| Mature sequence |
Cbr-Novel-4_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UGAUACGUUGGCGCAUUUCUGG -61
Get sequence
|
|---|
