| MirGeneDB ID | Cbr-Mir-7589 |
|---|
| Family name |
MIR-7589 (all species) |
|---|
| Species |
Roundworm (Caenorhabditis briggsae) |
|---|
| MiRBase ID |
cbr-mir-7589
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
C. briggsae
|
|---|
| Node of Origin (family) |
C. briggsae
|
|---|
Genome context
(CB4) |
X: 2057130-2057193 [+]
Ensembl
|
|---|
| Seed |
GGAAAUG |
|---|
Precursor
(pre-Mir +30nt flank) |
GCUAAGAAGAAGCACGCCGAUGAUGCAAAGGUAAGAUUCCUUCAUUUCAUCCAAAAAGUUGGUUGAAUUAUUUGGAAAUGGAGAAAUCUUACAGGCCCAGACAGCGCUCGUCAGCUCCGUUCUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GCUAAGAAGAAGCACGCCGAUGAU----| AAAG C UCA AAGUUGG
GC GUAAGAUU CUUCAUU UCCAAA \
CG CAUUCUAA GAGGUAA AGGUUU U
CUCUUGCCUCGACUGCUCGCGACAGACC^ GA-- A --- AUUAAGU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Ea |
Ma |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Yo |
Yo |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Cbr-Mir-7589_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GUAAGAUUCCUUCAUUUCAUCCAAA -25
Get sequence
|
|---|
| Mature sequence |
Cbr-Mir-7589_3p |
| mirBase accession | MIMAT0029595 |
|---|
| Sequence |
42- UGGAAAUGGAGAAAUCUUACAG -64
Get sequence
|
|---|
