MirGeneDB ID | Bla-Novel-9-P1 |
Family name |
BLA-NOVEL-3 (all species) |
Species |
European lancelet (Branchiostoma lanceolatum) |
MiRBase ID |
|
Paralogues |
Bla-Novel-9-P2
|
Orthologues |
|
Node of Origin (locus) |
B. lanceolatum
|
Node of Origin (family) |
B. lanceolatum
|
Genome context (BraLan2) |
Sc0000024: 1729961-1730019 [+]
Ensembl
|
Seed |
AUCAGAA |
Precursor (pre-Mir +30nt flank) |
CUGAGGCACAGUCAAGUACCUGUUUGGUUGAAUCAGAACUCACAAGUCCCGAUAGUUCUUAUCAGCCAGGACUUGUGAGUUCUGAUCCAACCACACCGGAAAAUGUCAUCAGUGUAAGA
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|
Structure | 10 20 30 40 50
CUGAGGCACAGUCAAGUA--| U U A CGAUAGUUC
CC GU UGGUUG AUCAGAACUCACAAGUCC \
GG CA ACCAAC UAGUCUUGAGUGUUCAGG U
AGAAUGUGACUACUGUAAAA^ C C C ACCGACUAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Bla-Novel-9-P1_5p |
mirBase accession | None |
Sequence |
0- AAUCAGAACUCACAAGUCCCGA -22
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|
Star sequence |
Bla-Novel-9-P1_3p* |
mirBase accession | None |
Sequence |
37- AGGACUUGUGAGUUCUGAUCCA -59
Get sequence
|