MirGeneDB 3.0

MirGeneDB ID

Bla-Novel-9-P1

Family name BLA-NOVEL-3 (all species)
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Novel-9-P2 
Orthologues
Node of Origin (locus) B. lanceolatum
Node of Origin (family) B. lanceolatum
Genome context
(BraLan2)
Sc0000024: 1729961-1730019 [+] Ensembl
Seed AUCAGAA
Precursor
(pre-Mir +30nt flank)
CUGAGGCACAGUCAAGUACCUGUUUGGUUGAAUCAGAACUCACAAGUCCCGAUAGUUCUUAUCAGCCAGGACUUGUGAGUUCUGAUCCAACCACACCGGAAAAUGUCAUCAGUGUAAGA
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Structure
        10          20        30        40        50         
CUGAGGCACAGUCAAGUA--| U  U      A                  CGAUAGUUC 
                    CC GU UGGUUG AUCAGAACUCACAAGUCC         \
                    GG CA ACCAAC UAGUCUUGAGUGUUCAGG         U
AGAAUGUGACUACUGUAAAA^ C  C      C                  ACCGACUAU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Em Em Em Em
Mature sequence

Bla-Novel-9-P1_5p

mirBase accessionNone
Sequence
0- AAUCAGAACUCACAAGUCCCGA -22
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Star sequence

Bla-Novel-9-P1_3p*

mirBase accessionNone
Sequence
37- AGGACUUGUGAGUUCUGAUCCA -59
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