| MirGeneDB ID | Bla-Novel-2 |
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| Family name |
BLA-NOVEL-2 (all species) |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
B. lanceolatum
|
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| Node of Origin (family) |
B. lanceolatum
|
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Genome context
(BraLan2) |
Sc0000006: 1902233-1902293 [+]
Ensembl
|
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| Seed |
GAGGCAA |
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Precursor
(pre-Mir +30nt flank) |
AACACUUCUCCAGGCACUGAUACUCCUAGACGAGGCAAAGCAGGAGUUCAUAAGUUACUUUGAACUGUUUGAGCUCCCGCUUAGCCUCAUCCAGAUCAGCGUCCGACUCAUCACAACAUUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AACACUUCUCCAGGCACU UA C--| A C A A UAAGUUACU
GA CU CU GA GAGGC AAGC GGAGUUCA \
CU GA GA CU CUCCG UUCG CCUCGAGU U
UUUACAACACUACUCAGC GC CUA^ C A A C UUGUCAAGU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Bla-Novel-2_5p |
| mirBase accession | None |
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| Sequence |
0- CGAGGCAAAGCAGGAGUUCAUA -22
Get sequence
|
|---|
| Star sequence |
Bla-Novel-2_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- UGAGCUCCCGCUUAGCCUCAUC -61
Get sequence
|
|---|
