MirGeneDB 2.1

MirGeneDB ID

Bla-Mir-4880

Family name MIR-4880 (all species)
Seed UUGCUAU
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues
Orthologues Bfl-Mir-4880 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Branchiostoma
Genome context
(BraLan2)
Sc0000057: 1180868-1180927 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUUUCUUCAUGGUGUAGUCCACUUGCUUAGUUUGCUAUUCGAUGACCAGUGGUCAUUUUUAAAAACCCAGUGGUCAAACAAUAGUAAACCUGGCGAGUGUGAAUGAUCCACGUUUGUUUG
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Structure
        10          20        30        40        50         
AUUUCUUCAUGGUGUAG-  -|       UA          CGA      G   UCAUUU 
                  UC CACUUGCU  GUUUGCUAUU   UGACCA UGG      U
                  AG GUGAGCGG  CAAAUGAUAA   ACUGGU ACC      U
GUUUGUUUGCACCUAGUA  U^       UC          CAA      G   CAAAAA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Mature sequence

Bla-Mir-4880_5p

mirBase accessionNone
Sequence
0- UUUGCUAUUCGAUGACCAGUGG -22
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Star sequence

Bla-Mir-4880_3p*

mirBase accessionNone
Sequence
38- AGUGGUCAAACAAUAGUAAACC -60
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