| MirGeneDB ID | Bla-Mir-4880 |
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| Family name |
MIR-4880 (all species) |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bfl-Mir-4880
|
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| Node of Origin (locus) |
Branchiostoma
|
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| Node of Origin (family) |
Branchiostoma
|
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Genome context
(BraLan2) |
Sc0000057: 1180868-1180927 [+]
Ensembl
|
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| Seed |
UUGCUAU |
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Precursor
(pre-Mir +30nt flank) |
AUUUCUUCAUGGUGUAGUCCACUUGCUUAGUUUGCUAUUCGAUGACCAGUGGUCAUUUUUAAAAACCCAGUGGUCAAACAAUAGUAAACCUGGCGAGUGUGAAUGAUCCACGUUUGUUUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUUUCUUCAUGGUGUAG- -| UA CGA G UCAUUU
UC CACUUGCU GUUUGCUAUU UGACCA UGG U
AG GUGAGCGG CAAAUGAUAA ACUGGU ACC U
GUUUGUUUGCACCUAGUA U^ UC CAA G CAAAAA
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Bla-Mir-4880_5p |
| mirBase accession | None |
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| Sequence |
0- UUUGCUAUUCGAUGACCAGUGG -22
Get sequence
|
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| Star sequence |
Bla-Mir-4880_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- AGUGGUCAAACAAUAGUAAACC -60
Get sequence
|
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