MirGeneDB ID | Bfl-Novel-4 |
Family name |
BRA-NOVEL-4 (all species) |
Seed |
CAUGAUA |
Species |
Florida lancelet (Branchiostoma floridae) |
MiRBase ID |
|
Paralogues |
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Orthologues |
Bla-Novel-4
|
Node of Origin (locus) |
Branchiostoma
|
Node of Origin (family) |
Branchiostoma
|
Genome context (GCF_000003815.2_Bfl_VNyyK_genomic) |
NC_049982.1: 15812188-15812247 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
GAACGAGACUGCCAUUUUCCCGCGGUCGGGUACUGUGUCCUUCCAUCAUAGUGUGUUUCUAUACGUCACCAUGAUACAGGACACAGUCCCUGACUGUGGGACCAAGCACGGCCGUGGCAA
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|
Structure | 10 20 30 40 50
GAACGAGACUGCCAUUU--| U UCC A UGUUUC
UCCCGCGGUCGGG ACUGUGUCCU AUCAU GUG \
AGGGUGUCAGUCC UGACACAGGA UAGUA CAC U
AACGGUGCCGGCACGAACC^ C CA- C UGCAUA
. 110 100 90 80 70 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | UGUG in loop |
Tissue expression
|
|
Star sequence |
Bfl-Novel-4_5p* (predicted) |
mirBase accession | None |
Sequence |
0- UACUGUGUCCUUCCAUCAUAGUG -23
Get sequence
|
Mature sequence |
Bfl-Novel-4_3p (predicted) |
mirBase accession | None |
Sequence |
38- CCAUGAUACAGGACACAGUCCC -60
Get sequence
|