| MirGeneDB ID | Bfl-Novel-4 |
|---|
| Family name |
BRA-NOVEL-4 (all species) |
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| Seed |
CAUGAUA |
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| Species |
Florida lancelet (Branchiostoma floridae) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bla-Novel-4
|
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| Node of Origin (locus) |
Branchiostoma
|
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| Node of Origin (family) |
Branchiostoma
|
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Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic) |
NC_049982.1: 15812188-15812247 [-]
UCSC
|
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Precursor
(pre-Mir +30nt flank) |
GAACGAGACUGCCAUUUUCCCGCGGUCGGGUACUGUGUCCUUCCAUCAUAGUGUGUUUCUAUACGUCACCAUGAUACAGGACACAGUCCCUGACUGUGGGACCAAGCACGGCCGUGGCAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GAACGAGACUGCCAUUU--| U UCC A UGUUUC
UCCCGCGGUCGGG ACUGUGUCCU AUCAU GUG \
AGGGUGUCAGUCC UGACACAGGA UAGUA CAC U
AACGGUGCCGGCACGAACC^ C CA- C UGCAUA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
Unknown
|
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| Motifs | UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Bfl-Novel-4_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- UACUGUGUCCUUCCAUCAUAGUG -23
Get sequence
|
|---|
| Mature sequence |
Bfl-Novel-4_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
38- CCAUGAUACAGGACACAGUCCC -60
Get sequence
|
|---|
