| MirGeneDB ID | Ava-Novel-8-P1 |
|---|
| Family name |
AVA-NOVEL-8 (all species) |
|---|
| Species |
Bdelloid rotifer (Adineta vaga) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Ava-Novel-8-P2
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
A. vaga
|
|---|
| Node of Origin (family) |
A. vaga
|
|---|
Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075496.1: 12192095-12192155 [+]
Ensembl
|
|---|
| Seed |
UCACAAC |
|---|
Precursor
(pre-Mir +30nt flank) |
AUUCUUUUAGUUAAUCGUGAUCAUAUCCUUUUCACAACCAAAAAGUGUCCAUUCGAGAUGAUUUUAUGGUUACUUUUUCGGGUUGUGGAUAGAACGGAUCGCCUAUUCUUCUUCUUCUCAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUUCUUUUAGUUAAUCGU--- AUAUC U --| U UCGAGA
GAUC CU UUCACAACC AAAAAGUG CCAU \
CUAG GA AGGUGUUGG UUUUUCAU GGUA U
UACUCUUCUUCUUCUUAUCCG GCAA- U GC^ U UUUUAG
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Ava-Novel-8-P1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UUCACAACCAAAAAGUGUCCAU -22
Get sequence
|
|---|
| Star sequence |
Ava-Novel-8-P1_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- GGUUACUUUUUCGGGUUGUGGAUA -61
Get sequence
|
|---|
