| MirGeneDB ID | Ava-Novel-3-P2 |
|---|
| Family name |
AVA-NOVEL-3 (all species) |
|---|
| Species |
Bdelloid rotifer (Adineta vaga) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Ava-Novel-3-P1
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
A. vaga
|
|---|
| Node of Origin (family) |
A. vaga
|
|---|
Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075495.1: 2883625-2883686 [-]
Ensembl
|
|---|
| Seed |
AUCUGAC |
|---|
Precursor
(pre-Mir +30nt flank) |
AUAAAUAUCGAUAACCAUUGUAUUGUCUCGAAUCUGACUAGUUUUGCAAUCUGCUCGAUAAUAAAAGUGCAGGUGCUGGCUUUUCAGAUACCUGACGACCAUUGAAAUCGACGAUUUAUUUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AUAAAUAUCGAUAACCAUUGUA--| UCGA CU UU A UCGAUA
UUGUC AUCUGA AGUU GCA UCUGC A
AGCAG UAGACU UCGG CGU GGACG U
AUUUAUUUAGCAGCUAAAGUUACC^ UCCA UU U- - UGAAAA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Ava-Novel-3-P2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AAUCUGACUAGUUUUGCAAUCUGC -24
Get sequence
|
|---|
| Star sequence |
Ava-Novel-3-P2_3p* |
| mirBase accession | None |
|---|
| Sequence |
40- AGGUGCUGGCUUUUCAGAUACC -62
Get sequence
|
|---|
