MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-9606

Family name MIR-9606 (all species)
Seed AAGGAUU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-9606
Paralogues
Orthologues
Node of Origin (locus) A. mississippiensis
Node of Origin (family) A. mississippiensis
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017709534.1: 102312-102374 [-] UCSC
Precursor
(pre-Mir +30nt flank)
UAACCAUAAACUUCCUGUGGAAUGCAGAGGCAAGGAUUUCUUAGGGUGAUAUCUUUUAAUUAUCUUUUCUUAUCACUCUAAUAAAUCCUUGCCUCUUCGACACCAUCAUUUCUGCACCUGACU
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Structure
        10         20         30        40        50        60 
UAACCAUAAACUUCCUG-   AA-| C              C          AUCUUUUAAU 
                  UGG   UG AGAGGCAAGGAUUU UUAGGGUGAU          \
                  ACC   GC UCUCCGUUCCUAAA AAUCUCACUA          U
UCAGUCCACGUCUUUACU   ACA^ U              U          UUCUUUUCUA 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Ami-Mir-9606_5p

mirBase accessionMIMAT0038356
Sequence
0- CAAGGAUUUCUUAGGGUGAU -20
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Co-mature sequence

Ami-Mir-9606_3p

mirBase accessionMIMAT0038357
Sequence
42- UCACUCUAAUAAAUCCUUGCC -63
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