| MirGeneDB ID | Ami-Mir-9603 |
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| Family name |
MIR-9603 (all species) |
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| Species |
American alligator (Alligator mississippiensis) |
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| MiRBase ID |
ami-mir-9603
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
A. mississippiensis
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| Node of Origin (family) |
A. mississippiensis
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Genome context
(GCF_000281125.3_ASM28112v4_AMI_add) |
NW_017713709.1: 18005429-18005492 [+]
UCSC
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| Seed |
GGGGCAC |
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Precursor
(pre-Mir +30nt flank) |
CCUGGUUCCAGACACAUCCUUGGCAAUAUCUGGGGCACAUCUCUAGAAGCAGGAAUAGUCAGGAUGCUCUGCUUCUAGUGACUUGCCUUGGAGAUUGCUGGAGGUACACCUCUGCAAGUGGGGG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CCUGGUUCCAGACACAU--- -|UG A UG CA U AGGAAUAGU
CC U GCAAU UC GGGCA UC CUAGAAGC C
GG G CGUUA AG UCCGU AG GAUCUUCG A
GGGGGUGAACGUCUCCACAU A^GU G GU UC U UCUCGUAGG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Ami-Mir-9603_5p |
| mirBase accession | MIMAT0038350 |
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| Sequence |
0- UGGGGCACAUCUCUAGAAGC -20
Get sequence
|
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| Star sequence |
Ami-Mir-9603_3p* |
| mirBase accession | MIMAT0038351 |
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| Sequence |
42- UUCUAGUGACUUGCCUUGGAGA -64
Get sequence
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