| MirGeneDB ID | Ami-Mir-9599 |
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| Family name |
MIR-9599 (all species) |
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| Species |
American alligator (Alligator mississippiensis) |
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| MiRBase ID |
ami-mir-9599
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
A. mississippiensis
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| Node of Origin (family) |
A. mississippiensis
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Genome context
(GCF_000281125.3_ASM28112v4_AMI_add) |
NW_017711096.1: 834252-834312 [-]
UCSC
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| Seed |
CUUUGCA |
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Precursor
(pre-Mir +30nt flank) |
CAAUGGACAUUUUCAGAGGAAGGCAGGGUAGCUUUGCACCUUACAGACUAACCAAAGUAGACAUAUUGGUUAAUCUAUAGGUGCAAAUCGACCUUGCCUUCUAUUUGACAUCAGACUCGCA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CAAUGGACAUUUUCAGA--| AGC UAC C AAAGUA
GGAAGGCAGGGU UUUGCACCU AGA UAACC G
UCUUCCGUUCCA AAACGUGGA UCU AUUGG A
ACGCUCAGACUACAGUUUA^ GCU UA- A UUAUAC
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Ami-Mir-9599_5p |
| mirBase accession | MIMAT0038342 |
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| Sequence |
0- GCUUUGCACCUUACAGACUAACC -23
Get sequence
|
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| Co-mature sequence |
Ami-Mir-9599_3p |
| mirBase accession | MIMAT0038343 |
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| Sequence |
39- UUAAUCUAUAGGUGCAAAUCGA -61
Get sequence
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