MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-9598

Family name MIR-9598 (all species)
Seed AGUACUA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-9598
Paralogues
Orthologues
Node of Origin (locus) A. mississippiensis
Node of Origin (family) A. mississippiensis
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017712978.1: 1774372-1774428 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CUGUCUACACCCUCUUCCCUUCUCCCCCCCCUUUCAAAAUUCUAGAUCUGCCUAUGGGCAUGGGUAGUACUAGGAUUUUGGAAAGGGGGUGGGAGGGCACAUGGUGAGGUGCAUCAU
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Structure
        10         20         30         40        50       
CUGUCUACACCCUCUUCCC-       -        -|          AU     UAUG 
                    UUCUCCC CCCCCUUU CAAAAUUCUAG  CUGCC    G
                    GGGAGGG GGGGGAAA GUUUUAGGAUC  GAUGG    G
UACUACGUGGAGUGGUACAC       U        G^          AU     GUAC 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Star sequence

Ami-Mir-9598_5p*

mirBase accessionMIMAT0038340
Sequence
0- CUUUCAAAAUUCUAGAUCUGCC -22
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Mature sequence

Ami-Mir-9598_3p

mirBase accessionMIMAT0038341
Sequence
34- UAGUACUAGGAUUUUGGAAAGGG -57
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