| MirGeneDB ID | Ami-Mir-1677-o3 |
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| Family name |
MIR-1677 (all species) |
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| Seed |
CUUCACU |
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| Species |
American alligator (Alligator mississippiensis) |
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| MiRBase ID |
ami-mir-1677a
|
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| Paralogues |
Ami-Mir-1677-o4
Ami-Mir-1677-o5
|
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| Orthologues |
Gga-Mir-1677-P3
|
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| Node of Origin (locus) |
A. mississippiensis
|
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| Node of Origin (family) |
Diapsida
|
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Genome context
(GCF_000281125.3_ASM28112v4_AMI_add) |
NW_017714194.1: 18734785-18734846 [+]
UCSC
|
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Precursor
(pre-Mir +30nt flank) |
UUCCUGUAGACACAUACUGUCUCCAGGCUUGGUCCAAUGCUCAUUGAAGUCAUGGAGAAUCUUUACACUGACUUCACUGAGCUUUGGACCAGGUUUCAUGAGAACUCAACCAAGAAAAUAAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUCCUGUAGACACAUACUG C--| U U UGGAGAA
UCUC AGGCUUGGUCCAA GCUCA UGAAGUCA U
AGAG UUUGGACCAGGUU CGAGU ACUUCAGU C
UAAUAAAAGAACCAACUCA UAC^ U C CACAUUU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Ami-Mir-1677-o3_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- GGUCCAAUGCUCAUUGAAGUCA -22
Get sequence
|
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| Mature sequence |
Ami-Mir-1677-o3_3p (predicted) |
| mirBase accession | MIMAT0038319 |
|---|
| Sequence |
40- ACUUCACUGAGCUUUGGACCAG -62
Get sequence
|
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