MirGeneDB ID | Xla-Mir-7-P1d |
Family name |
MIR-7 (all species) |
Seed |
GGAAGAC |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
|
Paralogues |
Xla-Mir-7-P1c
Xla-Mir-7-P2e
Xla-Mir-7-P2f
Xla-Mir-7-P3a
Xla-Mir-7-P3b
|
Orthologues |
Aae-Mir-7
Aca-Mir-7-P1
Ami-Mir-7-P1
Asu-Mir-7
Bfl-Mir-7
Bge-Mir-7
Bla-Mir-7
Bta-Mir-7-P1
Cfa-Mir-7-P1
Cgi-Mir-7
Cin-Mir-7
Cli-Mir-7-P1
Cmi-Mir-7-P1
Cpi-Mir-7-P1
Cpo-Mir-7-P1
Cte-Mir-7
Dan-Mir-7
Dma-Mir-7
Dme-Mir-7
Dmo-Mir-7
Dno-Mir-7-P1
Dsi-Mir-7
Dya-Mir-7
Esc-Mir-7
Ete-Mir-7-P1
Gga-Mir-7-P1
Gja-Mir-7-P1
Hme-Mir-7
Hsa-Mir-7-P1
Isc-Mir-7
Lan-Mir-7
Lch-Mir-7-P1
Lgi-Mir-7
Loc-Mir-7-P1
Lpo-Mir-7
Mdo-Mir-7-P1
Mml-Mir-7-P1
Mmu-Mir-7-P1
Npo-Mir-7
Oan-Mir-7-P1
Obi-Mir-7
Ocu-Mir-7-P1
Ovu-Mir-7
Pbv-Mir-7-P1
Pfl-Mir-7
Pma-Mir-7-o1
Pmi-Mir-7
Rno-Mir-7-P1
Sha-Mir-7-P1
Sko-Mir-7
Spt-Mir-7-P1
Spu-Mir-7
Sto-Mir-7-P1
Tca-Mir-7
Tgu-Mir-7-P1
Xbo-Mir-7
Xtr-Mir-7-P1
|
Node of Origin (locus) |
X. laevis
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_001663975.1_XLA_v2) |
NC_030729.1: 43281516-43281579 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCUAGAGAGGAGGUACAGGCUGGCUCUUUGUGGAAGACUAGUGAUUUUGUUGUUGUAAGUCUAUUUGCAUGACAACAAGUCACAGUCUGCCUCACAGUGCCCAGCAAUAACAGCGCUACCGAAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCUAGAGAGGAGGUACAG- -| U U U A A U GUAAGUC
GCU GGC CU UG GG AGACU GUGAUUU GUUGUU U
CGA CCG GA AC CC UCUGA CACUGAA CAACAG A
GAAGCCAUCGCGACAAUAA C^ U C U G - - UACGUUU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Xla-Mir-7-P1d_5p |
mirBase accession | None |
Sequence |
0- UGGAAGACUAGUGAUUUUGUUGUU -24
Get sequence
|
Star sequence |
Xla-Mir-7-P1d_3p* |
mirBase accession | None |
Sequence |
42- CAACAAGUCACAGUCUGCCUCA -64
Get sequence
|