MirGeneDB ID | Xla-Mir-29-P2d3 |
Family name |
MIR-29 (all species) |
Seed |
AGCACCA |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
|
Paralogues |
Xla-Mir-29-P1b3
Xla-Mir-29-P1b4
Xla-Mir-29-P1d3
Xla-Mir-29-P1d4
Xla-Mir-29-P2b3
Xla-Mir-29-P2b4
Xla-Mir-29-P2d4
|
Orthologues |
Aca-Mir-29-P2d
Ami-Mir-29-P2d
Asu-Mir-29-P2
Bfl-Mir-29-P2
Bla-Mir-29-P2
Cbr-Mir-29-P2
Cel-Mir-29-P2
Cgi-Mir-29-P2
Cin-Mir-29-P2
Cli-Mir-29-P2d
Cmi-Mir-29-P2d
Cpi-Mir-29-P2d
Cpo-Mir-29-P2d
Csc-Mir-29-P2
Cte-Mir-29-P2
Dno-Mir-29-P2d
Esc-Mir-29-P2
Ete-Mir-29-P2d
Gga-Mir-29-P2d
Gja-Mir-29-P2d
Hsa-Mir-29-P2d
Isc-Mir-29-P2
Lch-Mir-29-P2d
Lgi-Mir-29-P2
Loc-Mir-29-P2d-v1
Loc-Mir-29-P2d-v2
Mdo-Mir-29-P2d
Mml-Mir-29-P2d
Mmu-Mir-29-P2d
Mun-Mir-29-P2d
Npo-Mir-29-P2
Oan-Mir-29-P2d
Obi-Mir-29-P2
Ocu-Mir-29-P2d
Ovu-Mir-29-P2
Pbv-Mir-29-P2d
Pfl-Mir-29-P2
Pmi-Mir-29-P2
Sha-Mir-29-P2d
Sko-Mir-29-P2
Spt-Mir-29-P2d
Spu-Mir-29-P2
Sto-Mir-29-P2d
Tgu-Mir-29-P2d
Xbo-Mir-29-P2
Xtr-Mir-29-P2d
|
Node of Origin (locus) |
X. laevis
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_001663975.1_XLA_v2) |
NC_030726.1: 51883586-51883646 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUCAUAGAAAAAGGUCCCUUAAACAGGAUGACCGAUCUCUCUUGGUGUUUAGAGGCUUGGGUCUUCAUCUAGCACCAUUUGAAAUCGGUUAUUAUGUAAGGUGAAUGGCAACAUAGCUGCA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CUCAUAGAAAAAGGUCC----| AACAG C UCU U GGCUUG
CUUA GAUGACCGAU UC UGGUGUU AGA G
GAAU UUAUUGGCUA AG ACCACGA UCU G
ACGUCGAUACAACGGUAAGUG^ GUA-- A UUU - ACUUCU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut -2 on the 5p arm. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Xla-Mir-29-P2d3_5p* |
mirBase accession | None |
Sequence |
0- ACCGAUCUCUCUUGGUGUUUAGA -23
Get sequence
|
Mature sequence |
Xla-Mir-29-P2d3_3p |
mirBase accession | None |
Sequence |
39- UAGCACCAUUUGAAAUCGGUUA -61
Get sequence
|