MirGeneDB 2.1

MirGeneDB ID

Cbr-Mir-29-P2

Family name

MIR-29 (all species)

Seed

Species

Roundworm (Caenorhabditis briggsae)

MiRBase ID

cbr-mir-83

Paralogues

Cbr-Mir-29-P1

Orthologues

Aae-Mir-29-P2h Aca-Mir-29-P2b Aca-Mir-29-P2d Ami-Mir-29-P2b Ami-Mir-29-P2d Asu-Mir-29-P2 Bfl-Mir-29-P2 Bge-Mir-29-P2g Bge-Mir-29-P2h Bla-Mir-29-P2 Bta-Mir-29-P2b Bta-Mir-29-P2d1 Bta-Mir-29-P2d2 Cel-Mir-29-P2 Cfa-Mir-29-P2b Cfa-Mir-29-P2d7 Cfa-Mir-29-P2d8 Cgi-Mir-29-P2 Cin-Mir-29-P2 Cli-Mir-29-P2b Cli-Mir-29-P2d Cmi-Mir-29-P2a-v1 Cmi-Mir-29-P2a-v2 Cmi-Mir-29-P2b Cmi-Mir-29-P2d Cpi-Mir-29-P2b Cpi-Mir-29-P2d Cpo-Mir-29-P2b Cpo-Mir-29-P2d Csc-Mir-29-P2 Cte-Mir-29-P2 Dan-Mir-29-P2g Dan-Mir-29-P2h Dma-Mir-29-P2g Dma-Mir-29-P2h Dme-Mir-29-P2g Dme-Mir-29-P2h Dmo-Mir-29-P2g Dmo-Mir-29-P2h Dno-Mir-29-P2b Dno-Mir-29-P2d Dpu-Mir-29-P2g Dpu-Mir-29-P2h Dre-Mir-29-P2b1 Dre-Mir-29-P2d2 Dsi-Mir-29-P2g Dsi-Mir-29-P2h Dya-Mir-29-P2g Dya-Mir-29-P2h Ebu-Mir-29-P2e Ebu-Mir-29-P2f Efe-Mir-29-P2k Efe-Mir-29-P2l Esc-Mir-29-P2 Ete-Mir-29-P2b Ete-Mir-29-P2d Gga-Mir-29-P2b Gga-Mir-29-P2d Gja-Mir-29-P2b Gja-Mir-29-P2d Gmo-Mir-29-P2b1 Gmo-Mir-29-P2d1 Gmo-Mir-29-P2d2 Hme-Mir-29-P2h Hsa-Mir-29-P2b Hsa-Mir-29-P2d Isc-Mir-29-P2 Lan-Mir-29-P2i Lan-Mir-29-P2j Lch-Mir-29-P2a Lch-Mir-29-P2b Lch-Mir-29-P2d Lgi-Mir-29-P2 Loc-Mir-29-P2a Loc-Mir-29-P2b Loc-Mir-29-P2d-v1 Loc-Mir-29-P2d-v2 Lpo-Mir-29-P2m Lpo-Mir-29-P2n Mal-Mir-29-P2b1-v1 Mal-Mir-29-P2b1-v2 Mal-Mir-29-P2d1 Mal-Mir-29-P2d2 Mdo-Mir-29-P2b Mdo-Mir-29-P2d Mml-Mir-29-P2b Mml-Mir-29-P2d Mmu-Mir-29-P2b Mmu-Mir-29-P2d Mun-Mir-29-P2b Mun-Mir-29-P2d Npo-Mir-29-P2 Oan-Mir-29-P2b Oan-Mir-29-P2d Obi-Mir-29-P2 Ocu-Mir-29-P2b Ocu-Mir-29-P2d Ovu-Mir-29-P2 Pbv-Mir-29-P2b Pbv-Mir-29-P2d Pfl-Mir-29-P2 Pma-Mir-29-P2o1 Pma-Mir-29-P2o2 Pmi-Mir-29-P2 Rno-Mir-29-P2b Rno-Mir-29-P2d5 Rno-Mir-29-P2d6 Sha-Mir-29-P2b Sha-Mir-29-P2d Sko-Mir-29-P2 Spt-Mir-29-P2b Spt-Mir-29-P2d Spu-Mir-29-P2 Sto-Mir-29-P2b Sto-Mir-29-P2d Tca-Mir-29-P2g Tca-Mir-29-P2h Tgu-Mir-29-P2b Tgu-Mir-29-P2d Tni-Mir-29-P2b1 Tni-Mir-29-P2d1 Tni-Mir-29-P2d2 Xbo-Mir-29-P2 Xla-Mir-29-P2b3 Xla-Mir-29-P2b4 Xla-Mir-29-P2d3 Xla-Mir-29-P2d4 Xtr-Mir-29-P2b Xtr-Mir-29-P2d

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(CB4)

IV: 11660111-11660175 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

AGGAAGCAGCAGAAGGCACCACUCGAAAAAACUGAGUUUAUGUGUGUACUUGACGGCGAUCAGAGCAACGAUCUAGCACCAUAUAAAUUCAGUGUUUUCGUGGACAGAGAGCCAAGUUUUUAUAU

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Structure

        10            20        30        40        50        60  
AGGAAGCAGCAGAAGGCA----|   UC     A              U  A  U  CGGCGAUC 
                      CCAC  GAAAA ACUGAGUUUAUGUG GU CU GA        A
                      GGUG  CUUUU UGACUUAAAUAUAC CA GA CU        G
UAUAUUUUUGAACCGAGAGACA^   --     G              -  C  U  AGCAACGA 
   120       110       100          90        80         70

Deep sequencing

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3' NTU

No

Motifs

No

Tissue expression

-

+

01	02	03	04	05	06	07	08	09	10	11	12	13	14	15	16	Cb	Ea	Ma	Yo

Star sequence

Cbr-Mir-29-P2_5p*

mirBase accession

None

Sequence

0- ACUGAGUUUAUGUGUGUACUUGA -23

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Mature sequence

Cbr-Mir-29-P2_3p

mirBase accession

Sequence

43- UAGCACCAUAUAAAUUCAGUGU -65

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