MirGeneDB 2.1

MirGeneDB ID

Cgi-Mir-29-P2

Family name MIR-29 (all species)
Seed AGCACCA
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues Cgi-Mir-29-P1 
Orthologues Aae-Mir-29-P2h  Aca-Mir-29-P2b  Aca-Mir-29-P2d  Ami-Mir-29-P2b  Ami-Mir-29-P2d  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bge-Mir-29-P2g  Bge-Mir-29-P2h  Bla-Mir-29-P2  Bta-Mir-29-P2b  Bta-Mir-29-P2d1  Bta-Mir-29-P2d2  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cfa-Mir-29-P2b  Cfa-Mir-29-P2d7  Cfa-Mir-29-P2d8  Cin-Mir-29-P2  Cli-Mir-29-P2b  Cli-Mir-29-P2d  Cmi-Mir-29-P2a-v1  Cmi-Mir-29-P2a-v2  Cmi-Mir-29-P2b  Cmi-Mir-29-P2d  Cpi-Mir-29-P2b  Cpi-Mir-29-P2d  Cpo-Mir-29-P2b  Cpo-Mir-29-P2d  Csc-Mir-29-P2  Cte-Mir-29-P2  Dan-Mir-29-P2g  Dan-Mir-29-P2h  Dma-Mir-29-P2g  Dma-Mir-29-P2h  Dme-Mir-29-P2g  Dme-Mir-29-P2h  Dmo-Mir-29-P2g  Dmo-Mir-29-P2h  Dno-Mir-29-P2b  Dno-Mir-29-P2d  Dpu-Mir-29-P2g  Dpu-Mir-29-P2h  Dre-Mir-29-P2b1  Dre-Mir-29-P2d2  Dsi-Mir-29-P2g  Dsi-Mir-29-P2h  Dya-Mir-29-P2g  Dya-Mir-29-P2h  Ebu-Mir-29-P2e  Ebu-Mir-29-P2f  Efe-Mir-29-P2k  Efe-Mir-29-P2l  Esc-Mir-29-P2  Ete-Mir-29-P2b  Ete-Mir-29-P2d  Gga-Mir-29-P2b  Gga-Mir-29-P2d  Gja-Mir-29-P2b  Gja-Mir-29-P2d  Gmo-Mir-29-P2b1  Gmo-Mir-29-P2d1  Gmo-Mir-29-P2d2  Hme-Mir-29-P2h  Hsa-Mir-29-P2b  Hsa-Mir-29-P2d  Isc-Mir-29-P2  Lan-Mir-29-P2i  Lan-Mir-29-P2j  Lch-Mir-29-P2a  Lch-Mir-29-P2b  Lch-Mir-29-P2d  Lgi-Mir-29-P2  Loc-Mir-29-P2a  Loc-Mir-29-P2b  Loc-Mir-29-P2d-v1  Loc-Mir-29-P2d-v2  Lpo-Mir-29-P2m  Lpo-Mir-29-P2n  Mal-Mir-29-P2b1-v1  Mal-Mir-29-P2b1-v2  Mal-Mir-29-P2d1  Mal-Mir-29-P2d2  Mdo-Mir-29-P2b  Mdo-Mir-29-P2d  Mml-Mir-29-P2b  Mml-Mir-29-P2d  Mmu-Mir-29-P2b  Mmu-Mir-29-P2d  Mun-Mir-29-P2b  Mun-Mir-29-P2d  Npo-Mir-29-P2  Oan-Mir-29-P2b  Oan-Mir-29-P2d  Obi-Mir-29-P2  Ocu-Mir-29-P2b  Ocu-Mir-29-P2d  Ovu-Mir-29-P2  Pbv-Mir-29-P2b  Pbv-Mir-29-P2d  Pfl-Mir-29-P2  Pma-Mir-29-P2o1  Pma-Mir-29-P2o2  Pmi-Mir-29-P2  Rno-Mir-29-P2b  Rno-Mir-29-P2d5  Rno-Mir-29-P2d6  Sha-Mir-29-P2b  Sha-Mir-29-P2d  Sko-Mir-29-P2  Spt-Mir-29-P2b  Spt-Mir-29-P2d  Spu-Mir-29-P2  Sto-Mir-29-P2b  Sto-Mir-29-P2d  Tca-Mir-29-P2g  Tca-Mir-29-P2h  Tgu-Mir-29-P2b  Tgu-Mir-29-P2d  Tni-Mir-29-P2b1  Tni-Mir-29-P2d1  Tni-Mir-29-P2d2  Xbo-Mir-29-P2  Xla-Mir-29-P2b3  Xla-Mir-29-P2b4  Xla-Mir-29-P2d3  Xla-Mir-29-P2d4  Xtr-Mir-29-P2b  Xtr-Mir-29-P2d 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(CGI_GCA_000297895.1)
scaffold145: 188912-188969 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAACAACUGAGACACGCUACUGGCUGACAGCCUGGUCUCAUGUGGUGAAUAGAUGGAAACAAGUUCUAGCACCAUUUGAAAUCAGUUUGUCUGAGUGGCACAGCAUCUGAAUGUUACU
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Structure
        10            20        30        40        50         
AAACAACUGAGACACGC----|   GGCU     C     C   U      AA    UGGAA 
                     UACU    GACAG CUGGU UCA GUGGUG  UAGA     \
                     GUGA    CUGUU GACUA AGU UACCAC  AUCU     A
UCAUUGUAAGUCUACGACACG^   GU--     U     A   U      G-    UGAAC 
      110       100          90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Star sequence

Cgi-Mir-29-P2_5p*

mirBase accessionNone
Sequence
0- CCUGGUCUCAUGUGGUGAAUAGA -23
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Mature sequence

Cgi-Mir-29-P2_3p

mirBase accessionNone
Sequence
36- UAGCACCAUUUGAAAUCAGUUU -58
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