MirGeneDB ID | Tni-Mir-144 |
Family name |
MIR-144 (all species) |
Seed |
ACAGUAU |
Species |
Pufferfish (Tetraodon nigroviridis) |
MiRBase ID |
tni-mir-144
|
Paralogues |
|
Orthologues |
Aca-Mir-144-v1
Aca-Mir-144-v2
Ami-Mir-144
Bta-Mir-144-v1
Bta-Mir-144-v2
Cfa-Mir-144-v1
Cfa-Mir-144-v2
Cli-Mir-144-v1
Cli-Mir-144-v2
Cmi-Mir-144
Cpi-Mir-144
Cpo-Mir-144-v1
Cpo-Mir-144-v2
Dno-Mir-144
Dre-Mir-144-v1
Dre-Mir-144-v2
Ebu-Mir-144-v1
Ebu-Mir-144-v2
Ete-Mir-144
Gga-Mir-144
Gja-Mir-144-v1
Gja-Mir-144-v2
Gmo-Mir-144-v1
Gmo-Mir-144-v2
Hsa-Mir-144-v1
Hsa-Mir-144-v2
Lch-Mir-144
Loc-Mir-144-v1
Loc-Mir-144-v2
Mal-Mir-144-v1
Mal-Mir-144-v2
Mdo-Mir-144
Mml-Mir-144
Mmu-Mir-144-v1
Mmu-Mir-144-v2
Mun-Mir-144-v1
Mun-Mir-144-v2
Oan-Mir-144
Ocu-Mir-144-v1
Ocu-Mir-144-v2
Pbv-Mir-144
Pma-Mir-144
Rno-Mir-144-v1
Rno-Mir-144-v2
Sha-Mir-144
Spt-Mir-144
Sto-Mir-144
Tgu-Mir-144-v1
Tgu-Mir-144-v2
Xla-Mir-144-P1-v1
Xla-Mir-144-P1-v2
Xla-Mir-144-P2-v1
Xla-Mir-144-P2-v2
Xtr-Mir-144
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
7: 2925543-2925603 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCACCAGGCGCUGUGUCUUGUGCCCUGGACAGGAUAUCAUCUUAUACUGUAAGUUUAAUAAAGUGACACUACAGUAUAGAUGAUGUACUAUCCAGGGCUUCAUUCCUCCUCCGGCUCCAUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCACCAGGCGCUGUGUCUUGU--| C G U AGUUUAAU
GCCCUGGA AG AUAUCAUCU AUACUGUA A
CGGGACCU UC UGUAGUAGA UAUGACAU A
CUACCUCGGCCUCCUCCUUACUU^ A A - CACAGUGA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut +1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Tni-Mir-144_5p* |
mirBase accession | None |
Sequence |
0- AGGAUAUCAUCUUAUACUGUAAG -23
Get sequence
|
Mature sequence |
Tni-Mir-144_3p |
mirBase accession | MIMAT0003021 |
Sequence |
39- UACAGUAUAGAUGAUGUACUAU -61
Get sequence
|