MirGeneDB 2.1

MirGeneDB ID

Ocu-Mir-144-v1

Family name MIR-144 (all species)
Seed ACAGUAU
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-144
Paralogues Ocu-Mir-144-v2 
Orthologues Aca-Mir-144-v1  Ami-Mir-144  Bta-Mir-144-v1  Cfa-Mir-144-v1  Cli-Mir-144-v1  Cmi-Mir-144  Cpi-Mir-144  Cpo-Mir-144-v1  Dno-Mir-144  Dre-Mir-144-v1  Ebu-Mir-144-v1  Ete-Mir-144  Gga-Mir-144  Gja-Mir-144-v1  Gmo-Mir-144-v1  Hsa-Mir-144-v1  Lch-Mir-144  Loc-Mir-144-v1  Mal-Mir-144-v1  Mdo-Mir-144  Mml-Mir-144  Mmu-Mir-144-v1  Mun-Mir-144-v1  Oan-Mir-144  Pbv-Mir-144  Pma-Mir-144  Rno-Mir-144-v1  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tgu-Mir-144-v1  Tni-Mir-144  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(oryCun2_add)
chr19: 19330299-19330356 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-144-v1)
Mir-144-v1 chr19: 19330299-19330356 [+] UCSC Ensembl
Mir-144-v2 chr19: 19330299-19330356 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUCCUGUGUCCGCGGCAGGACCCUGGCUGGGAUAUCAUCAUAUACUGUAAGUUUGAGAUGAGACACUACAGUAUAGAUGAUGUACUAGUAAGGGCACCCCCAGCUCUGGAACCUGAA
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Structure
        10         20         30        40        50         
CUUCCUGUGUCCGCGGCA-  A-|   G     G        A         AGUUUGAG 
                   GG  CCCU GCUGG AUAUCAUC UAUACUGUA        \
                   CC  GGGA UGAUC UGUAGUAG AUAUGACAU        A
AAGUCCAAGGUCUCGACCC  AC^   A     A        -         CACAGAGU 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-144-v1_5p*

mirBase accessionMIMAT0048249
Sequence
0- GGAUAUCAUCAUAUACUGUAAG -22
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Mature sequence

Ocu-Mir-144-v1_3p

mirBase accessionMIMAT0048250
Sequence
37- UACAGUAUAGAUGAUGUACUA -58
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