MirGeneDB 2.1

MirGeneDB ID

Cpo-Mir-144-v2

Family name MIR-144 (all species)
Seed GAUAUCA
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-144
Paralogues Cpo-Mir-144-v1 
Orthologues Aca-Mir-144-v2  Ami-Mir-144  Bta-Mir-144-v2  Cfa-Mir-144-v2  Cli-Mir-144-v2  Cmi-Mir-144  Cpi-Mir-144  Dno-Mir-144  Dre-Mir-144-v2  Ebu-Mir-144-v2  Ete-Mir-144  Gga-Mir-144  Gja-Mir-144-v2  Gmo-Mir-144-v2  Hsa-Mir-144-v2  Lch-Mir-144  Loc-Mir-144-v2  Mal-Mir-144-v2  Mdo-Mir-144  Mml-Mir-144  Mmu-Mir-144-v2  Mun-Mir-144-v2  Oan-Mir-144  Ocu-Mir-144-v2  Pbv-Mir-144  Pma-Mir-144  Rno-Mir-144-v2  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tgu-Mir-144-v2  Tni-Mir-144  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)
scaffold_32: 23622352-23622409 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-144-v2)
Mir-144-v1 scaffold_32: 23622352-23622409 [+] UCSC
Mir-144-v2 scaffold_32: 23622352-23622409 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CCGAUUCCUGACCUCCUAGGGCUCUGGCUGGGAUAUCAUCAUAUACUGUAAGUUUGUGAUGAGACACUACAGUAUAGAUGAUGUACUAGUCCGGGUACCCCCAGCUCUGGAGUCUGAU
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Structure
        10        20          30        40        50         
CCGAUUCCUGACCUCCUA   C-     -|   G        A         A  UUGUG 
                  GGG  UCUGG CUGG AUAUCAUC UAUACUGUA GU     A
                  CCC  GGGCC GAUC UGUAGUAG AUAUGACAU CA     U
UAGUCUGAGGUCUCGACC   AU     U^   A        -         -  CAGAG 
      110       100        90        80         70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Cpo-Mir-144-v2_5p

mirBase accessionMIMAT0047012
Sequence
0- GGAUAUCAUCAUAUACUGUAAGU -23
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Star sequence

Cpo-Mir-144-v2_3p*

mirBase accessionMIMAT0047013
Sequence
36- CUACAGUAUAGAUGAUGUACUA -58
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