MirGeneDB ID | Cmi-Mir-144 |
Family name |
MIR-144 (all species) |
Seed |
GAUAUCA |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aca-Mir-144-v1
Aca-Mir-144-v2
Ami-Mir-144
Bta-Mir-144-v1
Bta-Mir-144-v2
Cfa-Mir-144-v1
Cfa-Mir-144-v2
Cli-Mir-144-v1
Cli-Mir-144-v2
Cpi-Mir-144
Cpo-Mir-144-v1
Cpo-Mir-144-v2
Dno-Mir-144
Dre-Mir-144-v1
Dre-Mir-144-v2
Ebu-Mir-144-v1
Ebu-Mir-144-v2
Ete-Mir-144
Gga-Mir-144
Gja-Mir-144-v1
Gja-Mir-144-v2
Gmo-Mir-144-v1
Gmo-Mir-144-v2
Hsa-Mir-144-v1
Hsa-Mir-144-v2
Lch-Mir-144
Loc-Mir-144-v1
Loc-Mir-144-v2
Mal-Mir-144-v1
Mal-Mir-144-v2
Mdo-Mir-144
Mml-Mir-144
Mmu-Mir-144-v1
Mmu-Mir-144-v2
Mun-Mir-144-v1
Mun-Mir-144-v2
Oan-Mir-144
Ocu-Mir-144-v1
Ocu-Mir-144-v2
Pbv-Mir-144
Pma-Mir-144
Rno-Mir-144-v1
Rno-Mir-144-v2
Sha-Mir-144
Spt-Mir-144
Sto-Mir-144
Tgu-Mir-144-v1
Tgu-Mir-144-v2
Tni-Mir-144
Xla-Mir-144-P1-v1
Xla-Mir-144-P1-v2
Xla-Mir-144-P2-v1
Xla-Mir-144-P2-v2
Xtr-Mir-144
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Node of Origin (locus) |
Vertebrata
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Node of Origin (family) |
Vertebrata
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Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635901.1: 2886912-2886970 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGGUUGUGGCCUUGCCUUGUGCUCUGGGCUGGAUAUCAUCAUAUAUUGUAAGUUCACAAUUCAGACACUACAGUAUAGAUGAUGUACUACACAGGGCUACACAUCUCCAGCCGCACACA
Get precursor sequence
|
Structure | 10 20 30 40 50
GGGUUGUGGCCUUGCCU- -| GGC - A A UCACAA
UGU GCUCUG UGG AUAUCAUC UAUAUUGUA GU \
ACA CGGGAC AUC UGUAGUAG AUAUGACAU CA U
ACACACGCCGACCUCUAC U^ AC- A - - CAGACU
110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Bl |
Br |
Ey |
Gi |
Gl |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Sk |
Sp |
Te |
Ut |
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Mature sequence |
Cmi-Mir-144_5p |
mirBase accession | None |
Sequence |
0- GGAUAUCAUCAUAUAUUGUAAGU -23
Get sequence
|
Star sequence |
Cmi-Mir-144_3p* |
mirBase accession | None |
Sequence |
37- CUACAGUAUAGAUGAUGUACUA -59
Get sequence
|