Mir-216-P2a1

MirGeneDB ID

Pma-Mir-216-P2a1

Family name

MIR-216 (all species)

Seed

AAUCUCU

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-216b

Paralogues

Pma-Mir-216-P2a2 Pma-Mir-216-P2b1

Orthologues

Aae-Mir-216-P2 Aca-Mir-216-P2a Ami-Mir-216-P2a Asu-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Bta-Mir-216-P2a Cbr-Mir-216-P2 Cel-Mir-216-P2 Cfa-Mir-216-P2a Cgi-Mir-216-P2 Cli-Mir-216-P2a Cmi-Mir-216-P2a Cpi-Mir-216-P2a Cpo-Mir-216-P2a Dan-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dno-Mir-216-P2a Dpu-Mir-216-P2 Dre-Mir-216-P2a Dsi-Mir-216-P2 Dya-Mir-216-P2 Efe-Mir-216-P2 Ete-Mir-216-P2a Gga-Mir-216-P2a Gja-Mir-216-P2a Gmo-Mir-216-P2a Hme-Mir-216-P2 Hsa-Mir-216-P2a Isc-Mir-216-P2 Lch-Mir-216-P2a Lgi-Mir-216-P2 Loc-Mir-216-P2a Mal-Mir-216-P2a Mdo-Mir-216-P2a Mml-Mir-216-P2a Mmu-Mir-216-P2a Oan-Mir-216-P2a Ocu-Mir-216-P2a Pbv-Mir-216-P2a Rno-Mir-216-P2a Sha-Mir-216-P2a Spt-Mir-216-P2a Sto-Mir-216-P2a Tca-Mir-216-P2 Tgu-Mir-216-P2a Tni-Mir-216-P2a

Node of Origin (locus)

Cyclostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046074.1: 1955059-1955119 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-216-P2a1)

Mir-217-P1 NC_046074.1: 1950981-1951039 [-] UCSC Ensembl
Mir-216-P2b1 NC_046074.1: 1952348-1952411 [-] UCSC Ensembl
Mir-216-P2a1 NC_046074.1: 1955059-1955119 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCAAAUAGGUGAUAAAUACUGCGGGUUGUAAAAUCUCUGCAGGCAACUGUGGAAAGGUGACCUUGUCACACAUUGGCCUGAAGGGAUUAUACAAACUGUAGCAGACGCAUCACUAUCACAU

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Structure

        10          20        30        40        50          
GCAAAUAGGUGAUAAAUA--|     G     A       G     AAC    GAAAGGUG 
                    CUGCGG UUGUA AAUCUCU CAGGC   UGUG        \
                    GAUGUC AACAU UUAGGGA GUCCG   ACAC        A
UACACUAUCACUACGCAGAC^     A     A       A     GUU    ACUGUUCC 
 .       110       100        90        80        70

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-216-P2a1_5p

mirBase accession

MIMAT0019527

Sequence

0- AAAUCUCUGCAGGCAACUGUGG -22

Get sequence

Star sequence

Pma-Mir-216-P2a1_3p* (predicted)

mirBase accession

None

Sequence

39- ACAUUGGCCUGAAGGGAUUAUA -61

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