MirGeneDB 2.1
MirGeneDB ID

Mmu-Mir-188-P1

Family name MIR-188 (all species)
Seed AUCCCUU
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-188
Paralogues Mmu-Mir-188-P2 
Orthologues Bta-Mir-188-P1  Cfa-Mir-188-P1  Cpo-Mir-188-P1  Dno-Mir-188-P1  Hsa-Mir-188-P1  Mml-Mir-188-P1  Ocu-Mir-188-P1  Rno-Mir-188-P1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(mm10)		 chrX: 7247992-7248051 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-188-P1)		 Mir-362-P4 chrX: 7237694-7237754 [-] UCSC Ensembl
Mir-362-P3 chrX: 7241269-7241328 [-] UCSC Ensembl
Mir-362-P1 chrX: 7241984-7242042 [-] UCSC Ensembl
Mir-188-P1 chrX: 7247992-7248051 [-] UCSC Ensembl
Mir-188-P2 chrX: 7248419-7248477 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAGUGAACCCUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAGCUCUCUGAAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGUGAGCUUCAGCUUUCCUUGCUCUC
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Structure
        10          20         30        40        50         
AGAGUGAACCCUUCCCU--    -| UC   CA  UC         GU      UGAGCUC 
                   GCUC CC  UCU  CA  CCUUGCAUG  GGAGGG       U
                   CGAG GG  AGG  GU  GGGACGUAC  CCUCCC       C
CUCUCGUUCCUUUCGACUU    U^ U-   AC  UU         AC      CAAAAGU 
.       110       100         90        80        70        60
Deep sequencing
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CommentThe Dicer cut is consistently +3 across mammals.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Mature sequence

Mmu-Mir-188-P1_5p
mirBase accessionMIMAT0000217
Sequence 
0- CAUCCCUUGCAUGGUGGAGGGU -22
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Proposed targets microrna.org: MIMAT0000217
TargetScanVert: mmu-miR-188-5p
miRDB: MIMAT0000217
Star sequence

Mmu-Mir-188-P1_3p*
mirBase accessionMIMAT0004541
Sequence 
39- CUCCCACAUGCAGGGUUUGCA -60
Get sequence
Proposed targets microrna.org: MIMAT0004541
TargetScanVert: mmu-miR-188-3p
miRDB: MIMAT0004541