Mir-188-P1

MirGeneDB ID

Bta-Mir-188-P1

Family name

MIR-188 (all species)

Seed

AUCCCUU

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-188

Paralogues

Bta-Mir-188-P2 Bta-Mir-188-P3

Orthologues

Cfa-Mir-188-P1 Cpo-Mir-188-P1 Dno-Mir-188-P1 Hsa-Mir-188-P1 Mml-Mir-188-P1 Mmu-Mir-188-P1 Ocu-Mir-188-P1 Rno-Mir-188-P1

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037357.1: 87725070-87725129 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-188-P1)

Mir-188-P2 NC_037357.1: 87724748-87724806 [+] UCSC Ensembl
Mir-188-P1 NC_037357.1: 87725070-87725129 [+] UCSC Ensembl
Mir-362-P6 NC_037357.1: 87732068-87732125 [+] UCSC Ensembl
Mir-362-P2-v1 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P2-v3 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P2-v2 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P1 NC_037357.1: 87736674-87736732 [+] UCSC Ensembl
Mir-362-P5 NC_037357.1: 87737938-87737999 [+] UCSC Ensembl
Mir-188-P3 NC_037357.1: 87740093-87740151 [+] UCSC Ensembl
Mir-362-P4 NC_037357.1: 87742037-87742095 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGAGUGAACCUUUCCCUGCUCCCUCUCUCACAUCCCUUGCAUGGUGGAGGGUGAGCUUUCUGAAAACCCCUCCCACAUGCAGGGUUUGCAGGAUGGUGAGCCUCGGCUUUUCUUGCUCUC

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Structure

        10          20         30        40        50         
AGAGUGAACCUUUCCCU--    -| UC   CA  UC         GU      UGAGCUU 
                   GCUC CC  UCU  CA  CCUUGCAUG  GGAGGG       U
                   CGAG GG  AGG  GU  GGGACGUAC  CCUCCC       C
CUCUCGUUCUUUUCGGCUC    U^ U-   AC  UU         AC      CAAAAGU 
.       110       100         90        80        70        60

Deep sequencing

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Comment

The 3' end of the 5p arm is monouridylated.

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Ad	Cd	Fe	Bo	Br	Ce	Co	Co	De	He	Hy	Ir	Ki	La	Lo	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-188-P1_5p

mirBase accession

MIMAT0009249

Sequence

0- CAUCCCUUGCAUGGUGGAGGG -21

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Proposed targets

TargetScanVert: bta-miR-188

Star sequence

Bta-Mir-188-P1_3p*

mirBase accession

None

Sequence

39- CUCCCACAUGCAGGGUUUGCA -60

Get sequence