MirGeneDB ID | Dpu-Mir-29-P2g |
Family name |
MIR-29 (all species) |
Seed |
AGCACCA |
Species |
Common water flea (Daphnia pulex) |
MiRBase ID |
dpu-mir-285
|
Paralogues |
Dpu-Mir-29-P2h
|
Orthologues |
Asu-Mir-29-P2
Bfl-Mir-29-P2
Bge-Mir-29-P2g
Bla-Mir-29-P2
Cbr-Mir-29-P2
Cel-Mir-29-P2
Cgi-Mir-29-P2
Cin-Mir-29-P2
Csc-Mir-29-P2
Cte-Mir-29-P2
Dan-Mir-29-P2g
Dma-Mir-29-P2g
Dme-Mir-29-P2g
Dmo-Mir-29-P2g
Dsi-Mir-29-P2g
Dya-Mir-29-P2g
Esc-Mir-29-P2
Isc-Mir-29-P2
Lgi-Mir-29-P2
Npo-Mir-29-P2
Obi-Mir-29-P2
Ovu-Mir-29-P2
Pfl-Mir-29-P2
Pmi-Mir-29-P2
Sko-Mir-29-P2
Spu-Mir-29-P2
Tca-Mir-29-P2g
Xbo-Mir-29-P2
|
Node of Origin (locus) |
Pancrustacea
|
Node of Origin (family) |
Bilateria
|
Genome context (Daphnia_pulex.V1.0) |
DAPPUscaffold_1: 332511-332576 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCUCAAGGAAGAAACAGAGGAGCUGGGAUCACUGAAUUCUUUUGAUGCCUAGAUGUAGUUUGUGACUAGAACUCUAGCACCAUUGGAAUUCAGUUUACCCUGGCUGGCGCAAUUCGUCGGUGUUUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCUCAAGGAAGAAACAGAGG- UG AUC-| UU A C UGUAGUUUG
AGC GG ACUGAAUUCU UG UGC UAGA \
UCG CC UGACUUAAGG AC ACG AUCU U
UUUUGUGGCUGCUUAACGCGG GU CAUU^ UU C - CAAGAUCAG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
|
Star sequence |
Dpu-Mir-29-P2g_5p* |
mirBase accession | None |
Sequence |
0- ACUGAAUUCUUUUGAUGCCUAGA -23
Get sequence
|
Mature sequence |
Dpu-Mir-29-P2g_3p |
mirBase accession | MIMAT0012656 |
Sequence |
44- UAGCACCAUUGGAAUUCAGUUU -66
Get sequence
|