Mir
Gene
DB
2.1
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107 microRNA genes with seed AGGUAGU
Sort by genome coordinates
Motifs
MirGeneDB ID
MiRBase ID
Family
Seed
5p accession
3p accession
Chromosome
Start
End
Strand
Node of origin (locus)
Node of origin (family)
3' NTU
UG
UGUG
CNNC
▲
Cli-Mir-196-P4
cli-mir-196-2
MIR-196
AGGUAGU
MIMAT0038570
None
scaffold922
197745
197802
+
Gnathostomata
Olfactores
No
Loc-Mir-196-P4
None
MIR-196
AGGUAGU
None
None
None
None
None
None
Gnathostomata
Olfactores
No
Tni-Mir-196-P4a1
tni-mir-196a-1
MIR-196
AGGUAGU
MIMAT0002956
None
None
None
None
None
T. nigroviridis
Olfactores
Unknown
Tni-Mir-196-P4a2
tni-mir-196a-1
MIR-196
AGGUAGU
MIMAT0002956
None
None
None
None
None
T. nigroviridis
Olfactores
Unknown
Tni-Mir-196-P4a3
tni-mir-196a-1
MIR-196
AGGUAGU
MIMAT0002956
None
None
None
None
None
T. nigroviridis
Olfactores
Unknown
Dre-Mir-196-P1b
dre-mir-196d
MIR-196
AGGUAGU
MIMAT0011313
None
chr16
20913420
20913478
+
Clupeocephala
Olfactores
No
Cin-Mir-196
cin-mir-196
MIR-196
AGGUAGU
MIMAT0016413
MIMAT0016414
7
2713377
2713429
-
Olfactores
Olfactores
Unknown
1
Cte-Mir-2687
cte-mir-2687
MIR-2687
AGGUAGU
MIMAT0013539
None
CAPTEscaffold_610
82412
82480
-
Annelida
Annelida
Unknown
1
Efe-Mir-2687
None
MIR-2687
AGGUAGU
None
None
Efet.01.83002
1888
1951
+
Annelida
Annelida
No
1
Pma-Mir-196-o1
pma-mir-196a
MIR-196
AGGUAGU
MIMAT0019502
MIMAT0019503
NC_046078.1
8134714
8134775
+
P. marinus
Olfactores
No
1
Tgu-Mir-196-P1
tgu-mir-196
MIR-196
AGGUAGU
MIMAT0025394
None
2
33989168
33989226
-
Gnathostomata
Olfactores
No
1
Sto-Mir-196-P1
None
MIR-196
AGGUAGU
None
None
BFAA01000097.1
1251099
1251156
-
Gnathostomata
Olfactores
No
1
Hsa-Mir-196-P1
hsa-mir-196b
MIR-196
AGGUAGU
MIMAT0001080
MIMAT0009201
chr7
27169492
27169549
-
Gnathostomata
Olfactores
No
1
Ami-Mir-196-P1
ami-mir-196-3
MIR-196
AGGUAGU
MIMAT0038215
None
NW_017712875.1
24902813
24902871
-
Gnathostomata
Olfactores
Unknown
1
Cmi-Mir-196-P1
None
MIR-196
AGGUAGU
None
None
KI635933.1
1104598
1104655
+
Gnathostomata
Olfactores
No
1
Mml-Mir-196-P1
mml-mir-196b
MIR-196
AGGUAGU
MIMAT0006229
MIMAT0026840
chr3
81000158
81000215
+
Gnathostomata
Olfactores
No
1
Cpi-Mir-196-P1
cpi-mir-196-3
MIR-196
AGGUAGU
MIMAT0037815
None
JH584682
644036
644094
-
Gnathostomata
Olfactores
Unknown
1
Mmu-Mir-196-P1
mmu-mir-196b
MIR-196
AGGUAGU
MIMAT0001081
MIMAT0017170
chr6
52230093
52230150
-
Gnathostomata
Olfactores
No
1
Aca-Mir-196-P1
aca-mir-196a-1
MIR-196
AGGUAGU
MIMAT0021831
None
GL343275.1
1429558
1429620
+
Gnathostomata
Olfactores
No
1
Pbv-Mir-196-P1
pbv-mir-196c
MIR-196
AGGUAGU
MIMAT0038995
None
KE953980.1
281968
282028
+
Gnathostomata
Olfactores
Unknown
1
Cpo-Mir-196-P1
cpo-mir-196b
MIR-196
AGGUAGU
MIMAT0047082
MIMAT0047083
scaffold_44
3907441
3907498
-
Gnathostomata
Olfactores
No
1
Gja-Mir-196-P1
None
MIR-196
AGGUAGU
None
None
NW_015170898.1
1224278
1224340
-
Gnathostomata
Olfactores
No
1
Ocu-Mir-196-P1
ocu-mir-196b
MIR-196
AGGUAGU
MIMAT0048315
MIMAT0048316
chr10
11887975
11888032
-
Gnathostomata
Olfactores
No
1
Spt-Mir-196-P1
None
MIR-196
AGGUAGU
None
None
QEPC01011191.1
2904310
2904370
-
Gnathostomata
Olfactores
Unknown
1
Cfa-Mir-196-P1
cfa-mir-196b
MIR-196
AGGUAGU
MIMAT0006620
None
chr14
40344005
40344062
-
Gnathostomata
Olfactores
No
1
Bta-Mir-196-P1
bta-mir-196b
MIR-196
AGGUAGU
MIMAT0009256
None
NC_037331.1
68873169
68873226
+
Gnathostomata
Olfactores
No
1
Xtr-Mir-196-P1
xtr-mir-196b
MIR-196
AGGUAGU
MIMAT0003691
None
chr6
32896546
32896604
+
Gnathostomata
Olfactores
Unknown
1
Dno-Mir-196-P1
dno-mir-196b
MIR-196
AGGUAGU
MIMAT0047731
MIMAT0047732
JH562181
5934
5991
-
Gnathostomata
Olfactores
No
1
Mun-Mir-196-P1
None
MIR-196
AGGUAGU
None
None
196-P1_LR594632.1:169050405-169050547
43
101
-
Gnathostomata
Olfactores
Unknown
1
Ete-Mir-196-P1
None
MIR-196
AGGUAGU
None
None
JH980305
55282907
55282964
-
Gnathostomata
Olfactores
No
1
Lch-Mir-196-P1
None
MIR-196
AGGUAGU
None
None
JH126711.1
2060364
2060422
-
Gnathostomata
Olfactores
Unknown
1
Sha-Mir-196-P1
None
MIR-196
AGGUAGU
None
None
GL861706.1
2274380
2274438
+
Gnathostomata
Olfactores
No
1
Mdo-Mir-196-P1
mdo-mir-196b
MIR-196
AGGUAGU
MIMAT0004124
None
8
297346810
297346868
+
Gnathostomata
Olfactores
Unknown
1
Oan-Mir-196-P1
oan-mir-196b
MIR-196
AGGUAGU
MIMAT0007139
MIMAT0007140
NC_041735.1
55167001
55167059
+
Gnathostomata
Olfactores
Unknown
1
Gga-Mir-196-P1
gga-mir-196-2
MIR-196
AGGUAGU
MIMAT0001121
MIMAT0026504
2
32649895
32649953
-
Gnathostomata
Olfactores
No
1
Cli-Mir-196-P1
cli-mir-196-3
MIR-196
AGGUAGU
MIMAT0038570
MIMAT0038572
scaffold699
1139790
1139848
-
Gnathostomata
Olfactores
No
1
Loc-Mir-196-P1
None
MIR-196
AGGUAGU
None
None
LG11
41141719
41141777
-
Gnathostomata
Olfactores
No
1
Rno-Mir-196-P1d
rno-mir-196b-2
MIR-196
AGGUAGU
MIMAT0001082
MIMAT0017171
chr4
82199068
82199125
-
R. norvegicus
Olfactores
No
1
Pma-Mir-196-o2
None
MIR-196
AGGUAGU
None
None
NC_046070.1
1095082
1095141
+
P. marinus
Olfactores
Unknown
1
Pma-Mir-196-o3
None
MIR-196
AGGUAGU
None
None
NC_046124.1
733295
733353
-
P. marinus
Olfactores
Unknown
1
Sto-Mir-196-P3
None
MIR-196
AGGUAGU
None
None
BFAA01000145.1
370520
370577
-
Gnathostomata
Olfactores
Unknown
1
Hsa-Mir-196-P3
hsa-mir-196a-1
MIR-196
AGGUAGU
MIMAT0000226
MIMAT0037307
chr17
48632494
48632553
-
Gnathostomata
Olfactores
No
1
Ami-Mir-196-P3
ami-mir-196-1
MIR-196
AGGUAGU
MIMAT0038215
None
NW_017708231.1
3471039
3471098
-
Gnathostomata
Olfactores
Unknown
1
Cmi-Mir-196-P3
None
MIR-196
AGGUAGU
None
None
KI635976.1
1249990
1250047
+
Gnathostomata
Olfactores
No
1
Mml-Mir-196-P3
mml-mir-196a-1
MIR-196
AGGUAGU
MIMAT0002519
None
chr16
41255194
41255253
+
Gnathostomata
Olfactores
No
1
Cpi-Mir-196-P3
cpi-mir-196-1
MIR-196
AGGUAGU
MIMAT0037815
MIMAT0037816
JH584731
2484790
2484849
-
Gnathostomata
Olfactores
No
1
Mmu-Mir-196-P3
mmu-mir-196a-1
MIR-196
AGGUAGU
MIMAT0000518
MIMAT0017013
chr11
96265187
96265246
+
Gnathostomata
Olfactores
No
1
Aca-Mir-196-P3
aca-mir-196c
MIR-196
AGGUAGU
MIMAT0021832
MIMAT0021833
6
75666553
75666613
-
Gnathostomata
Olfactores
No
1
Rno-Mir-196-P3
rno-mir-196c
MIR-196
AGGUAGU
MIMAT0005303
MIMAT0017299
chr10
84113588
84113647
+
Gnathostomata
Olfactores
No
1
Pbv-Mir-196-P3
pbv-mir-196a
MIR-196
AGGUAGU
MIMAT0038993
MIMAT0038994
KE954034.1
30623
30683
-
Gnathostomata
Olfactores
Unknown
1
Cpo-Mir-196-P3
cpo-mir-196a
MIR-196
AGGUAGU
MIMAT0047078
MIMAT0047079
scaffold_53
8623790
8623849
+
Gnathostomata
Olfactores
No
1
Gja-Mir-196-P3
None
MIR-196
AGGUAGU
None
None
NW_015168072.1
216886
216946
+
Gnathostomata
Olfactores
Unknown
1
Ocu-Mir-196-P3
ocu-mir-196a-1
MIR-196
AGGUAGU
MIMAT0048311
MIMAT0048312
chr19
38730720
38730779
+
Gnathostomata
Olfactores
No
1
Spt-Mir-196-P3
None
MIR-196
AGGUAGU
None
None
QEPC01008679.1
1374373
1374431
-
Gnathostomata
Olfactores
Unknown
1
Cfa-Mir-196-P3
cfa-mir-196a-1
MIR-196
AGGUAGU
MIMAT0006662
None
chr9
24895683
24895742
-
Gnathostomata
Olfactores
Unknown
1
Bta-Mir-196-P3
bta-mir-196a-1
MIR-196
AGGUAGU
MIMAT0009255
None
NC_037346.1
37860888
37860947
+
Gnathostomata
Olfactores
No
1
Dno-Mir-196-P3
dno-mir-196c
MIR-196
AGGUAGU
MIMAT0047733
MIMAT0047734
JH566304
23130
23189
-
Gnathostomata
Olfactores
No
1
Lch-Mir-196-P3
None
MIR-196
AGGUAGU
None
None
JH126617.1
1196138
1196196
-
Gnathostomata
Olfactores
Unknown
1
Sha-Mir-196-P3
None
MIR-196
AGGUAGU
None
None
GL856828.1
1096256
1096315
-
Gnathostomata
Olfactores
No
1
Mdo-Mir-196-P3
mdo-mir-196a
MIR-196
AGGUAGU
MIMAT0028494
MIMAT0028495
2
201215985
201216044
-
Gnathostomata
Olfactores
No
1
Gga-Mir-196-P3
gga-mir-196-1
MIR-196
AGGUAGU
MIMAT0001121
MIMAT0031017
27
6183444
6183503
+
Gnathostomata
Olfactores
No
1
Cli-Mir-196-P3
cli-mir-196-1
MIR-196
AGGUAGU
MIMAT0038570
MIMAT0038571
scaffold265
1508615
1508674
+
Gnathostomata
Olfactores
No
1
Loc-Mir-196-P3
None
MIR-196
AGGUAGU
None
None
LG15
9244730
9244790
-
Gnathostomata
Olfactores
No
1
Tgu-Mir-196-P4
None
MIR-196
AGGUAGU
None
None
29
2679763
2679820
+
Gnathostomata
Olfactores
Unknown
1
Hsa-Mir-196-P4
hsa-mir-196a-2
MIR-196
AGGUAGU
MIMAT0000226
MIMAT0004562
chr12
53991762
53991820
+
Gnathostomata
Olfactores
No
1
Ami-Mir-196-P4
ami-mir-196-2
MIR-196
AGGUAGU
MIMAT0038215
None
NW_017708254.1
280066
280123
+
Gnathostomata
Olfactores
Unknown
1
Cmi-Mir-196-P4
None
MIR-196
AGGUAGU
None
None
KI636119.1
230953
231010
+
Gnathostomata
Olfactores
No
1
Mml-Mir-196-P4
mml-mir-196a-2
MIR-196
AGGUAGU
MIMAT0002519
MIMAT0026839
chr11
52660864
52660922
+
Gnathostomata
Olfactores
No
1
Cpi-Mir-196-P4
cpi-mir-196-2
MIR-196
AGGUAGU
MIMAT0037815
MIMAT0037817
JH584844
1085528
1085585
-
Gnathostomata
Olfactores
No
1
Mmu-Mir-196-P4
mmu-mir-196a-2
MIR-196
AGGUAGU
MIMAT0000518
MIMAT0004618
chr15
102973365
102973423
+
Gnathostomata
Olfactores
No
1
Aca-Mir-196-P4
aca-mir-196a-2
MIR-196
AGGUAGU
MIMAT0021831
None
2
72077189
72077246
-
Gnathostomata
Olfactores
No
1
Rno-Mir-196-P4
rno-mir-196a
MIR-196
AGGUAGU
MIMAT0000871
MIMAT0004737
chr7
144584259
144584317
+
Gnathostomata
Olfactores
No
1
Cpo-Mir-196-P4
cpo-mir-196c
MIR-196
AGGUAGU
MIMAT0047080
MIMAT0047081
scaffold_9
45819379
45819437
-
Gnathostomata
Olfactores
No
1
Gja-Mir-196-P4
None
MIR-196
AGGUAGU
None
None
NW_015167536.1
481383
481440
-
Gnathostomata
Olfactores
No
1
Ocu-Mir-196-P4
ocu-mir-196a-2
MIR-196
AGGUAGU
MIMAT0048313
MIMAT0048314
chr4
37775899
37775957
+
Gnathostomata
Olfactores
No
1
Spt-Mir-196-P4
None
MIR-196
AGGUAGU
None
None
QEPC01003896.1
1321540
1321597
-
Gnathostomata
Olfactores
Unknown
1
Cfa-Mir-196-P4
cfa-mir-196a-2
MIR-196
AGGUAGU
MIMAT0006662
None
chr27
1270718
1270776
-
Gnathostomata
Olfactores
No
1
Bta-Mir-196-P4
bta-mir-196a-2
MIR-196
AGGUAGU
MIMAT0009255
None
NC_037332.1
26040804
26040862
-
Gnathostomata
Olfactores
No
1
Xtr-Mir-196-P4
xtr-mir-196a
MIR-196
AGGUAGU
MIMAT0003690
None
chr2
142905384
142905444
-
Gnathostomata
Olfactores
No
1
Dno-Mir-196-P4
dno-mir-196a
MIR-196
AGGUAGU
MIMAT0047729
MIMAT0047730
JH569826
1030436
1030494
+
Gnathostomata
Olfactores
No
1
Mun-Mir-196-P4
None
MIR-196
AGGUAGU
None
None
196-P3_LR594634.1:315333046-315333189
44
101
-
Gnathostomata
Olfactores
Unknown
1
Ete-Mir-196-P4
None
MIR-196
AGGUAGU
None
None
JH980427
757096
757154
+
Gnathostomata
Olfactores
No
1
Lch-Mir-196-P4
None
MIR-196
AGGUAGU
None
None
JH126829.1
1686811
1686868
-
Gnathostomata
Olfactores
Unknown
1
Sha-Mir-196-P4
None
MIR-196
AGGUAGU
None
None
GL861729.1
250515
250573
+
Gnathostomata
Olfactores
No
1
Oan-Mir-196-P4
oan-mir-196a
MIR-196
AGGUAGU
MIMAT0006876
MIMAT0006877
NC_041737.1
57674459
57674517
+
Gnathostomata
Olfactores
No
1
Gga-Mir-196-P4
gga-mir-196-3
MIR-196
AGGUAGU
MIMAT0001121
None
33
7592237
7592294
+
Gnathostomata
Olfactores
No
1
Ebu-Mir-196-P5
None
MIR-196
AGGUAGU
None
None
FYBX02009525.1
1711837
1711894
-
E. burgeri
Olfactores
Unknown
1
Ebu-Mir-196-P6
None
MIR-196
AGGUAGU
None
None
FYBX02009826.1
1916388
1916448
+
E. burgeri
Olfactores
Unknown
1
Tni-Mir-196-P1a
tni-mir-196a-2
MIR-196
AGGUAGU
MIMAT0002956
None
21
3025758
3025815
+
Clupeocephala
Olfactores
Unknown
1
Gmo-Mir-196-P1a
gmo-mir-196a
MIR-196
AGGUAGU
MIMAT0044146
None
GeneScaffold_1730
83617
83675
-
Clupeocephala
Olfactores
No
1
Mal-Mir-196-P1a
None
MIR-196
AGGUAGU
None
None
KV884831.1
1314516
1314573
-
Clupeocephala
Olfactores
No
1
Dre-Mir-196-P1a
dre-mir-196a-2
MIR-196
AGGUAGU
MIMAT0001276
MIMAT0031983
chr19
19747629
19747686
+
Clupeocephala
Olfactores
No
1
Xla-Mir-196-P1e
None
MIR-196
AGGUAGU
None
None
NC_030734.1
39652903
39652962
-
X. laevis
Olfactores
No
1
Tni-Mir-196-P3a
tni-mir-196b
MIR-196
AGGUAGU
MIMAT0003034
None
Un_random
5576389
5576449
-
Clupeocephala
Olfactores
No
1
Mal-Mir-196-P3a
None
MIR-196
AGGUAGU
None
None
KV884780.1
181712
181773
+
Clupeocephala
Olfactores
No
1
Dre-Mir-196-P3a
dre-mir-196b
MIR-196
AGGUAGU
MIMAT0001860
None
chr3
23673387
23673447
+
Clupeocephala
Olfactores
No
1
Gmo-Mir-196-P4a
gmo-mir-196b
MIR-196
AGGUAGU
MIMAT0044059
None
contig48991
1476
1534
+
Clupeocephala
Olfactores
Unknown
1
Mal-Mir-196-P4a
None
MIR-196
AGGUAGU
None
None
KV884694.1
1840009
1840067
-
Clupeocephala
Olfactores
Unknown
1
Dre-Mir-196-P4a
dre-mir-196a-1
MIR-196
AGGUAGU
MIMAT0001276
None
chr23
36088111
36088169
+
Clupeocephala
Olfactores
No
1
Tni-Mir-196-P1b
None
MIR-196
AGGUAGU
None
None
8
6797449
6797506
+
Clupeocephala
Olfactores
No
1
Gmo-Mir-196-P1b
None
MIR-196
AGGUAGU
None
None
contig689238
4120
4178
+
Clupeocephala
Olfactores
Unknown
1
Mal-Mir-196-P1b
None
MIR-196
AGGUAGU
None
None
KV884815.1
2846296
2846353
+
Clupeocephala
Olfactores
No
1
Xla-Mir-196-P1f
None
MIR-196
AGGUAGU
None
None
NC_030735.1
33756951
33757010
-
X. laevis
Olfactores
No
1
Dre-Mir-196-P4b
dre-mir-196c
MIR-196
AGGUAGU
MIMAT0011298
None
chr11
2190643
2190701
+
Clupeocephala
Olfactores
No
1
Rno-Mir-196-P1c
rno-mir-196b-1
MIR-196
AGGUAGU
MIMAT0001082
MIMAT0017171
chr4
82284863
82284920
-
R. norvegicus
Olfactores
No
1
Xla-Mir-196-P4d-v1
None
MIR-196
AGGUAGU
None
None
NC_030727.1
128789652
128789713
-
X. laevis
Olfactores
No
1
Xla-Mir-196-P4c-v1
None
MIR-196
AGGUAGU
None
None
NC_030726.1
148332751
148332811
-
X. laevis
Olfactores
No
1
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