Mir-196-P1

MirGeneDB ID

Cfa-Mir-196-P1

Family name

MIR-196 (all species)

Seed

AGGUAGU

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-196b

Paralogues

Cfa-Mir-196-P3 Cfa-Mir-196-P4

Orthologues

Aca-Mir-196-P1 Ami-Mir-196-P1 Bta-Mir-196-P1 Cin-Mir-196 Cli-Mir-196-P1 Cmi-Mir-196-P1 Cpi-Mir-196-P1 Cpo-Mir-196-P1 Dno-Mir-196-P1 Dre-Mir-196-P1a Dre-Mir-196-P1b Ete-Mir-196-P1 Gga-Mir-196-P1 Gja-Mir-196-P1 Gmo-Mir-196-P1a Gmo-Mir-196-P1b Hsa-Mir-196-P1 Lch-Mir-196-P1 Loc-Mir-196-P1 Mal-Mir-196-P1a Mal-Mir-196-P1b Mdo-Mir-196-P1 Mml-Mir-196-P1 Mmu-Mir-196-P1 Mun-Mir-196-P1 Oan-Mir-196-P1 Ocu-Mir-196-P1 Pbv-Mir-196-P1 Pma-Mir-196-o1 Rno-Mir-196-P1c Rno-Mir-196-P1d Sha-Mir-196-P1 Spt-Mir-196-P1 Sto-Mir-196-P1 Tgu-Mir-196-P1 Tni-Mir-196-P1a Tni-Mir-196-P1b Xla-Mir-196-P1e Xla-Mir-196-P1f Xtr-Mir-196-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(canFam3_add)

chr14: 40344005-40344062 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGCGGGCAGCACCAGAACUGGUCGGUGAUUUAGGUAGUUUCCUGUUGUUGGGAUCCACCUUUCUCUCGACAGCACGACACUGCCUUCAUUACUUCAGUUGAAAUCGUCUCCAGGUACC

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Structure

        10            20        30        40        50        
CGCGGGCAGCACCAGAA----|   UC      UU       U  C           UCCA 
                     CUGG  GGUGAU  AGGUAGU UC UGUUGUUGGGA    C
                     GACU  UCAUUA  UCCGUCA AG ACGACAGCUCU    C
CCAUGGACCUCUGCUAAAGUU^   --      CU       C  C           CUUU 
      110       100          90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Ce	Co	He	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-196-P1_5p

mirBase accession

MIMAT0006620

Sequence

0- UAGGUAGUUUCCUGUUGUUGGGA -23

Get sequence

Proposed targets

TargetScanVert: cfa-miR-196b
miRDB: MIMAT0006620

Star sequence

Cfa-Mir-196-P1_3p*

mirBase accession

None

Sequence

35- UCGACAGCACGACACUGCCUUCA -58

Get sequence