MirGeneDB 2.1
MirGeneDB ID

Ocu-Mir-196-P3

Family name MIR-196 (all species)
Seed AGGUAGU
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-196a-1
Paralogues Ocu-Mir-196-P1  Ocu-Mir-196-P4 
Orthologues Aca-Mir-196-P3  Ami-Mir-196-P3  Bta-Mir-196-P3  Cfa-Mir-196-P3  Cin-Mir-196  Cli-Mir-196-P3  Cmi-Mir-196-P3  Cpi-Mir-196-P3  Cpo-Mir-196-P3  Dno-Mir-196-P3  Dre-Mir-196-P3a  Gga-Mir-196-P3  Gja-Mir-196-P3  Hsa-Mir-196-P3  Lch-Mir-196-P3  Loc-Mir-196-P3  Mal-Mir-196-P3a  Mdo-Mir-196-P3  Mml-Mir-196-P3  Mmu-Mir-196-P3  Pbv-Mir-196-P3  Pma-Mir-196-o3  Rno-Mir-196-P3  Sha-Mir-196-P3  Spt-Mir-196-P3  Sto-Mir-196-P3  Tni-Mir-196-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(oryCun2_add)		 chr19: 38730720-38730779 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGAGCUGGAACUGGAACUGCUGGGUGAAUUAGGUAGUUUCAUGUUGUUGGGCCUGGGUCUCUGAACACAACGACAUGGAACCACCUGACUCACGGCAGUUACUGCUCCUCGCUUAGCUG
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Structure
        10            20        30        40        50         
UGGAGCUGGAACUGGAA----|    GG    A      A              GGCCUGGG 
                     CUGCU  GUGA UUAGGU GUUUCAUGUUGUUG        U
                     GACGG  CACU AGUCCA CAAGGUACAGCAAC        C
GUCGAUUCGCUCCUCGUCAUU^    --    C      C              ACAAGUCU 
.       110       100          90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
He Ki Te To Wh
Mature sequence

Ocu-Mir-196-P3_5p
mirBase accessionMIMAT0048311
Sequence 
0- UAGGUAGUUUCAUGUUGUUGGG -22
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Star sequence

Ocu-Mir-196-P3_3p*
mirBase accessionMIMAT0048312
Sequence 
38- CAACGACAUGGAACCACCUGAC -60
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