MirGeneDB 2.1

MirGeneDB ID

Cin-Mir-196

Family name

MIR-196 (all species)

Seed

Species

Sea Squirt (Ciona intestinalis)

MiRBase ID

cin-mir-196

Paralogues

Orthologues

Aca-Mir-196-P1 Aca-Mir-196-P3 Aca-Mir-196-P4 Ami-Mir-196-P1 Ami-Mir-196-P3 Ami-Mir-196-P4 Bta-Mir-196-P1 Bta-Mir-196-P3 Bta-Mir-196-P4 Cfa-Mir-196-P1 Cfa-Mir-196-P3 Cfa-Mir-196-P4 Cli-Mir-196-P1 Cli-Mir-196-P3 Cli-Mir-196-P4 Cmi-Mir-196-P1 Cmi-Mir-196-P3 Cmi-Mir-196-P4 Cpi-Mir-196-P1 Cpi-Mir-196-P3 Cpi-Mir-196-P4 Cpo-Mir-196-P1 Cpo-Mir-196-P3 Cpo-Mir-196-P4 Dno-Mir-196-P1 Dno-Mir-196-P3 Dno-Mir-196-P4 Dre-Mir-196-P1a Dre-Mir-196-P1b Dre-Mir-196-P3a Dre-Mir-196-P4a Dre-Mir-196-P4b Ebu-Mir-196-P5 Ebu-Mir-196-P6 Ete-Mir-196-P1 Ete-Mir-196-P4 Gga-Mir-196-P1 Gga-Mir-196-P3 Gga-Mir-196-P4 Gja-Mir-196-P1 Gja-Mir-196-P3 Gja-Mir-196-P4 Gmo-Mir-196-P1a Gmo-Mir-196-P1b Gmo-Mir-196-P4a Hsa-Mir-196-P1 Hsa-Mir-196-P3 Hsa-Mir-196-P4 Lch-Mir-196-P1 Lch-Mir-196-P3 Lch-Mir-196-P4 Loc-Mir-196-P1 Loc-Mir-196-P3 Loc-Mir-196-P4 Mal-Mir-196-P1a Mal-Mir-196-P1b Mal-Mir-196-P3a Mal-Mir-196-P4a Mdo-Mir-196-P1 Mdo-Mir-196-P3 Mml-Mir-196-P1 Mml-Mir-196-P3 Mml-Mir-196-P4 Mmu-Mir-196-P1 Mmu-Mir-196-P3 Mmu-Mir-196-P4 Mun-Mir-196-P1 Mun-Mir-196-P4 Oan-Mir-196-P1 Oan-Mir-196-P4 Ocu-Mir-196-P1 Ocu-Mir-196-P3 Ocu-Mir-196-P4 Pbv-Mir-196-P1 Pbv-Mir-196-P3 Pma-Mir-196-o1 Pma-Mir-196-o2 Pma-Mir-196-o3 Rno-Mir-196-P1c Rno-Mir-196-P1d Rno-Mir-196-P3 Rno-Mir-196-P4 Sha-Mir-196-P1 Sha-Mir-196-P3 Sha-Mir-196-P4 Spt-Mir-196-P1 Spt-Mir-196-P3 Spt-Mir-196-P4 Sto-Mir-196-P1 Sto-Mir-196-P3 Tgu-Mir-196-P1 Tgu-Mir-196-P4 Tni-Mir-196-P1a Tni-Mir-196-P1b Tni-Mir-196-P3a Tni-Mir-196-P4a1 Tni-Mir-196-P4a2 Tni-Mir-196-P4a3 Xla-Mir-196-P1e Xla-Mir-196-P1f Xla-Mir-196-P4c-v1 Xla-Mir-196-P4c-v2 Xla-Mir-196-P4d-v1 Xla-Mir-196-P4d-v2 Xtr-Mir-196-P1 Xtr-Mir-196-P4

Node of Origin (locus)

Olfactores

Node of Origin (family)

Olfactores

Genome context
(ci3)

7: 2713377-2713429 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAUUCCAAACGAUUUCUCUGUACUCUGUAGUAGGUAGUUUAAAGUUGUGGAGAUUUGGACUCCACAGCUUUAGGCGGCCUGCUAGAAUGUACAGACUCACGCCAAAGAAUAGC

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Structure

        10          20        30        40        50      
AAUUCCAAACGAUUUCU--|     UCUG        A                AUU 
                   CUGUAC    UAGUAGGU GUUUAAAGUUGUGGAG   \
                   GACAUG    AUCGUCCG CGGAUUUCGACACCUC   U
CGAUAAGAAACCGCACUCA^     UAAG        G                AGG 
 110       100        90        80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

-

+

Cr	Cr	Cr	Cr	Cr	Cr	Cr	Cr	Cr	Cr	Ga	La	La

Mature sequence

Cin-Mir-196_5p

mirBase accession

Sequence

0- UAGGUAGUUUAAAGUUGUGGAG -22

Get sequence

Star sequence

Cin-Mir-196_3p* (predicted)

mirBase accession

Sequence

31- CCACAGCUUUAGGCGGCCUGCU -53

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