| MirGeneDB ID | Xla-Novel-7-P1 |
|---|
| Family name |
XEN-NOVEL-7 (all species) |
|---|
| Seed |
UUCCUGC |
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| Species |
African clawed frog (Xenopus laevis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Xla-Novel-7-P2
|
|---|
| Orthologues |
Xtr-Novel-7
|
|---|
| Node of Origin (locus) |
X. laevis
|
|---|
| Node of Origin (family) |
Xenopus
|
|---|
Genome context
(GCF_001663975.1_XLA_v2) |
NC_030724.1: 107877980-107878048 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUACUGCUUAAGAUAUGUUGGGGUUUUGCAGGAUUUCACAUUGCAGGAAGCAAUGGGCUCCAAUAUAUAAAAUAAUGUUUCCUGCAGUGUGACAUCCUGCAAGAUCCUGAGUAAGCUUCAUCUUUGCUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUACUGCUUAAGAUAUG--|UG U AUGGGCUCCAA
U GGGUUUUGCAGGAU UCACAUUGCAGGAAGCA \
A CCUAGAACGUCCUA AGUGUGACGUCCUUUGU U
GUCGUUUCUACUUCGAAUG^GU C AAUAAAAUAUA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Xla-Novel-7-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GGAUUUCACAUUGCAGGAAGCA -22
Get sequence
|
|---|
| Mature sequence |
Xla-Novel-7-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
47- UUUCCUGCAGUGUGACAUCCUG -69
Get sequence
|
|---|
