| MirGeneDB ID | Xla-Novel-20 |
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| Family name |
XLA-NOVEL-20 (all species) |
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| Seed |
CUGCAGA |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
X. laevis
|
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| Node of Origin (family) |
X. laevis
|
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Genome context
(GCF_001663975.1_XLA_v2) |
NC_030736.1: 6649903-6649962 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUUUGGGUUUGACAAUGGUGCAGGUAGCGUCUCCUGAUGCUUCUCUUCUCAGUUCUAUCCCUGGAACUCUGCAGAGAAGUGUCGGAAGACUCCACCGGCACAGAGCAACAGGUGGCGCUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AUUUGGGUUUGACAAUG--| A AGC C UCU UUCUAUC
GUGC GGU GUCU CUGAUGCUUCUCU CAG C
CACG CCA CAGA GGCUGUGAAGAGA GUC C
CUCGCGGUGGACAACGAGA^ G CCU A C-- UCAAGGU
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Xla-Novel-20_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CUCCUGAUGCUUCUCUUCUCAGU -23
Get sequence
|
|---|
| Mature sequence |
Xla-Novel-20_3p |
| mirBase accession | None |
|---|
| Sequence |
37- UCUGCAGAGAAGUGUCGGAAGAC -60
Get sequence
|
|---|
