MirGeneDB ID | Ovu-Novel-76 |
Family name |
OCT-NOVEL-76 (all species) |
Seed |
GAACAUU |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
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Orthologues |
Obi-Novel-76
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Node of Origin (locus) |
Octopus
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Node of Origin (family) |
Octopus
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01070356.1: 8867-8922 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
UAUGGCAAAGGUAUUGCACAUCAUUCUAGCUGAACAUUCUCUAAGAACACCAUAUUAAAAUGUGGUCUUCUUAGAGAAUGUUCAGCUUGACUGAUAGUACUUAUUGGAAGGAAGAA
Get precursor sequence
|
Structure | 10 20 30 40 50
UAUGGCAAAGGUAUUGC- -| U U C AUAUU
AC AUCA UC AGCUGAACAUUCUCUAAGAA ACC A
UG UAGU AG UCGACUUGUAAGAGAUUCUU UGG A
AAGAAGGAAGGUUAUUCA A^ C U C UGUAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | The 3' end of the 3p arm might be mono-uridylated. |
3' NTU |
Unknown
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Motifs | No |
Tissue expression
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Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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Mature sequence |
Ovu-Novel-76_5p |
mirBase accession | None |
Sequence |
0- UGAACAUUCUCUAAGAACACC -21
Get sequence
|
Star sequence |
Ovu-Novel-76_3p* |
mirBase accession | None |
Sequence |
35- UCUUCUUAGAGAAUGUUCAGC -56
Get sequence
|