MirGeneDB ID | Ovu-Novel-57 |
Family name |
OCT-NOVEL-57 (all species) |
Seed |
AAACUCA |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
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Orthologues |
Obi-Novel-57
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Node of Origin (locus) |
Octopus
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Node of Origin (family) |
Octopus
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01067042.1: 220147-220206 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
UGAUGACGGAGAACUCUUUUUUUGGUUAGUAGUUUUCUUCUCUCAGUUUAUCUGUAAGAUUUAUACCACAAACUCAGAGAAGAGAUCUGCCAACUGAAAAACAAAGCAACAUGGUUCUCC
Get precursor sequence
|
Structure | 10 20 30 40 50
UGAUGACGGAGAACUCU--| UG A U C AUCUGUAAG
UUUUU GUU GUAG UUUCUUCUCU AGUUU A
AAAAA CAA CGUC AGAGAAGAGA UCAAA U
CCUCUUGGUACAACGAAAC^ GU C U C CACCAUAUU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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Star sequence |
Ovu-Novel-57_5p* |
mirBase accession | None |
Sequence |
0- AGUUUUCUUCUCUCAGUUUAUC -22
Get sequence
|
Mature sequence |
Ovu-Novel-57_3p |
mirBase accession | None |
Sequence |
38- CAAACUCAGAGAAGAGAUCUGC -60
Get sequence
|