MirGeneDB ID | Ovu-Novel-49 |
Family name |
COL-NOVEL-49 (all species) |
Seed |
AGCAAUG |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
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Orthologues |
Esc-Novel-49
Obi-Novel-49
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Node of Origin (locus) |
Coleoidea
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Node of Origin (family) |
Coleoidea
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01075135.1: 15425-15487 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
CGGCUACUUUUAAUAGUUGCCAUUUGUUAAAACCCCAGAGACUGGUGGCUUGGUUACAUUUAACAAAUGCCAAGCAAUGGCUUCUUAGGUUUUAACAGUACUUUACAACUGCAGAACUGAAAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CGGCUACUUUUAAUAGUUGCCAU--| CC GA GUG UUACAUU
UUGUUAAAACC AGA CUG GCUUGG U
GACAAUUUUGG UCU GGU CGAACC A
GAAAGUCAAGACGUCAACAUUUCAU^ AU UC AA- GUAAACA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | CNNC at 3p(+17) |
Tissue expression
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Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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Star sequence |
Ovu-Novel-49_5p* |
mirBase accession | None |
Sequence |
0- AACCCCAGAGACUGGUGGCUUGG -23
Get sequence
|
Mature sequence |
Ovu-Novel-49_3p |
mirBase accession | None |
Sequence |
41- AAGCAAUGGCUUCUUAGGUUUU -63
Get sequence
|