| MirGeneDB ID | Obi-Novel-87-v2 |
|---|
| Family name |
OCT-NOVEL-87 (all species) |
|---|
| Seed |
UGAGCAA |
|---|
| Species |
California two-spot octopus (Octopus bimaculoides) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Obi-Novel-87-v1
|
|---|
| Orthologues |
Ovu-Novel-87-v2
|
|---|
| Node of Origin (locus) |
Octopus
|
|---|
| Node of Origin (family) |
Octopus
|
|---|
Genome context
(PRJNA270931_OBI) |
KQ415659: 1637502-1637560 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGGAACGAUGAGUGAAAAGCCUGGAAAAGUCUGAGCAAAGGAAAUGUUAGGCCGUAAAAUAUUCCUGGCAGCAUGUUCUUUUCUCUGAUUAGUCCAGGUUUCAAACAAUCGCGUGGAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGGAACGAUGAGUGAAA--| AA U C A AG UAAAA
AGCCUGGA AGUC GAG AAAGGA AUGUU GCCG \
UUGGACCU UUAG CUC UUUCUU UACGA CGGU U
AAAGGUGCGCUAACAAACU^ GA U U G -- CCUUA
110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Obi-Novel-87-v2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CUGAGCAAAGGAAAUGUUAGGCCG -24
Get sequence
|
|---|
| Star sequence |
Obi-Novel-87-v2_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- GCAGCAUGUUCUUUUCUCUGAU -59
Get sequence
|
|---|
