| MirGeneDB ID | Bpl-Novel-4 |
|---|
| Family name |
BPL-NOVEL-4 (all species) |
|---|
| Seed |
AGAUGUA |
|---|
| Species |
Rotifer (Brachionus plicatilis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
B. plicatilis
|
|---|
| Node of Origin (family) |
B. plicatilis
|
|---|
Genome context
(Bpl_ASM1027981) |
QEOQ01000192.1: 1028040-1028121 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
ACUCACUAUUCAAACUUAGAACAUAGCAUUGAGAUGUAUUGUUAACUAACCGUAGAUUUAAUGAUUGUUUAGAUUCUUGUCUAAAUUUGGUUGGUUAAUUUUACGUCUACACUGUCAUUGUUUCUUCACUCAUCUGUUAAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
ACUCACUAUUCAAACUUA- UA- U -| UU UAGAUUUAAUGAUUGUU
GAACA GCA UG AGAUGUA GUUAACUAACCG \
UUUGU UGU AC UCUGCAU UAAUUGGUUGGU U
AAAAUUGUCUACUCACUUC UAC C A^ UU UUAAAUCUGUUCUUAGA
140 130 120 110 100 90 80 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut -1 on the 3p arm. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Bpl-Novel-4_5p |
| mirBase accession | None |
|---|
| Sequence |
0- GAGAUGUAUUGUUAACUAACCG -22
Get sequence
|
|---|
| Star sequence |
Bpl-Novel-4_3p* |
| mirBase accession | None |
|---|
| Sequence |
59- GUUGGUUAAUUUUACGUCUACAC -82
Get sequence
|
|---|
