MirGeneDB ID | Xla-Mir-34-P2c1 |
Family name |
MIR-34 (all species) |
Seed |
GGCAGUG |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
|
Paralogues |
Xla-Mir-34-P1a
Xla-Mir-34-P1b
Xla-Mir-34-P2a1a
Xla-Mir-34-P2a1b
Xla-Mir-34-P2a2a
Xla-Mir-34-P2a2b
Xla-Mir-34-P2b1a
Xla-Mir-34-P2b1b
Xla-Mir-34-P2b2a
Xla-Mir-34-P2b2b
Xla-Mir-34-P2c2
Xla-Mir-34-P3a1
Xla-Mir-34-P3a2
Xla-Mir-34-P3b1
Xla-Mir-34-P3b2
Xla-Mir-34-P3c1
Xla-Mir-34-P3c2
Xla-Mir-34-P3d1
Xla-Mir-34-P3d2
|
Orthologues |
Aae-Mir-34
Asu-Mir-34
Bge-Mir-34
Cbr-Mir-34
Cel-Mir-34
Cgi-Mir-34
Cin-Mir-34
Cte-Mir-34
Dan-Mir-34
Dma-Mir-34
Dme-Mir-34
Dmo-Mir-34
Dpu-Mir-34
Dsi-Mir-34
Dya-Mir-34
Efe-Mir-34
Esc-Mir-34
Isc-Mir-34
Lgi-Mir-34
Npo-Mir-34
Obi-Mir-34
Ovu-Mir-34
Pfl-Mir-34
Pmi-Mir-34
Sko-Mir-34
Spu-Mir-34
Tca-Mir-34
Xbo-Mir-34
|
Node of Origin (locus) |
X. laevis
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_001663975.1_XLA_v2) |
NC_030736.1: 77170709-77170769 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACAUGUCUGUCUGAACUGUGUUAGGUUUUCAGGCAGUGUAGUUAGCUGAUUGUGUUAAAUCAAAUGUGCAAUCACUAGCUAAACUGCCAUCAAAACUCAACAUGAAAGUGCUGCAUGGAUA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
ACAUGUCUGUCUGAACU- AG CA-| G C GUUAAA
GUGUU GUUUU GGCAGU UAGUUAG UGAUUGU U
UACAA CAAAA CCGUCA AUCGAUC ACUAACG C
AUAGGUACGUCGUGAAAG CU CUA^ A - UGUAAA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Xla-Mir-34-P2c1_5p |
mirBase accession | None |
Sequence |
0- AGGCAGUGUAGUUAGCUGAUUGU -23
Get sequence
|
Star sequence |
Xla-Mir-34-P2c1_3p* |
mirBase accession | None |
Sequence |
39- AAUCACUAGCUAAACUGCCAUC -61
Get sequence
|