MirGeneDB ID | Lan-Mir-1989-P1 |
Family name |
MIR-1989 (all species) |
Seed |
CAGCUGU |
Species |
Lingula (Lingula anatina) |
MiRBase ID |
|
Paralogues |
Lan-Mir-1989-P2
Lan-Mir-1989-P3
|
Orthologues |
Cgi-Mir-1989
Cte-Mir-1989
Lgi-Mir-1989
Npo-Mir-1989
Sme-Mir-1989
|
Node of Origin (locus) |
L. anatina
|
Node of Origin (family) |
Platytrochozoa
|
Genome context (LinAna_1.0) |
LFEI01000019: 478556-478612 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAUGGAUGCCAUAGUAACCUUUUUGCUGUGUCAGCUGUCAUGAUGCCUUCUUGAAGCUCUACAAAGAAGACGUGAUGGCAUCUGGCCCAGCGAAGAGAGGAAGAGCAGCAGCACCAG
Get precursor sequence
|
Structure | 10 20 30 40 50
AAUGGAUGCCAUAGUAAC--| U C G C GAAGC
CUUUUUGCUG GUCAG UGUCAU AUG CUUCUU \
GAGAAGCGAC CGGUC ACGGUA UGC GAAGAA U
GACCACGACGACGAGAAGGA^ C U G A ACAUC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Lan-Mir-1989-P1_5p |
mirBase accession | None |
Sequence |
0- UCAGCUGUCAUGAUGCCUUCUU -22
Get sequence
|
Star sequence |
Lan-Mir-1989-P1_3p* (predicted) |
mirBase accession | None |
Sequence |
35- GAAGACGUGAUGGCAUCUGGCC -57
Get sequence
|