| MirGeneDB ID | Cgi-Mir-1989 |
|---|
| Family name |
MIR-1989 (all species) |
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| Seed |
CAGCUGU |
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| Species |
Pacific oyster (Crassostrea gigas) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Cte-Mir-1989
Lan-Mir-1989-P1
Lan-Mir-1989-P2
Lan-Mir-1989-P3
Lgi-Mir-1989
Npo-Mir-1989
Sme-Mir-1989
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| Node of Origin (locus) |
Platytrochozoa
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| Node of Origin (family) |
Platytrochozoa
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Genome context
(CGI_GCA_000297895.1) |
scaffold593: 350245-350303 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGCCUAGCUUAAUCAGAAGGCCUAAGCAAUUCAGCUGUCACGAUGCCUUCUUGUGUGAAUAGAGUAAGAAGUUGUCGAGACAGCUGUGUUGUCUGCGGCCAGCUUGCUUCUGCUUUGUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGCCUAGCUUAAUCAGAA- -| AG U A GC GUGUGA
GGCC UA CAAU CAGCUGUC CGAU CUUCUU \
CCGG GU GUUG GUCGACAG GCUG GAAGAA A
UUGUUUCGUCUUCGUUCGA C^ CU U A UU UGAGAU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| A- |
D- |
D- |
Eg |
F- |
Gi |
He |
Ju |
L- |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
Ea |
Fe |
Ha |
La |
Ma |
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| Mature sequence |
Cgi-Mir-1989_5p |
| mirBase accession | None |
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| Sequence |
0- UCAGCUGUCACGAUGCCUUCUU -22
Get sequence
|
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| Star sequence |
Cgi-Mir-1989_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- GAAGUUGUCGAGACAGCUGUGU -59
Get sequence
|
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