MirGeneDB ID | Lan-Mir-1989-P2 |
Family name |
MIR-1989 (all species) |
Seed |
CAGCUGU |
Species |
Lingula (Lingula anatina) |
MiRBase ID |
|
Paralogues |
Lan-Mir-1989-P1
Lan-Mir-1989-P3
|
Orthologues |
Cgi-Mir-1989
Cte-Mir-1989
Lgi-Mir-1989
Npo-Mir-1989
Sme-Mir-1989
|
Node of Origin (locus) |
L. anatina
|
Node of Origin (family) |
Platytrochozoa
|
Genome context (LinAna_1.0) |
LFEI01000019: 478190-478247 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGGCACAAAAGAUGAGAGCGUUGCCACAUGUCAGCUGUCAUGAUGCCUUCUUGAGUGACAAACAAAGAAGGUGCAAUGUCUGCUGGCAUGUUGCAUUGUAAAAUUACUUUGUGACAAC
Get precursor sequence
|
Structure | 10 20 30 40 50
GGGCACAAAAGAUGAGA--| U C UGU GA GAGUG
GCG UGC ACAUGUCAGC CAU UGCCUUCUU A
UGU ACG UGUACGGUCG GUA GUGGAAGAA C
CAACAGUGUUUCAUUAAAA^ U U UCU AC ACAAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Lan-Mir-1989-P2_5p |
mirBase accession | None |
Sequence |
0- UCAGCUGUCAUGAUGCCUUCUU -22
Get sequence
|
Star sequence |
Lan-Mir-1989-P2_3p* (predicted) |
mirBase accession | None |
Sequence |
36- GAAGGUGCAAUGUCUGCUGGCA -58
Get sequence
|